Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032696.1-P | Field mustard | endoplasmic reticulum, extracellular | 87.44 | 92.74 |
| CDY01119 | Canola | endoplasmic reticulum, extracellular | 90.18 | 90.8 |
| CDY47327 | Canola | endoplasmic reticulum, extracellular | 89.73 | 90.76 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 81.28 | 80.91 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 75.34 | 79.33 |
| AT5G48900.1 | Thale cress | extracellular | 74.43 | 78.18 |
| AT1G04680.1 | Thale cress | extracellular | 70.32 | 71.46 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 64.38 | 69.12 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 64.16 | 68.87 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 70.78 | 65.96 |
| AT5G63180.1 | Thale cress | plastid | 63.24 | 64.12 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 59.13 | 62.26 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 64.16 | 62.17 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 48.86 | 54.59 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 47.26 | 53.91 |
| AT1G30350.1 | Thale cress | extracellular | 43.61 | 51.9 |
| AT3G53190.1 | Thale cress | extracellular | 55.94 | 50.72 |
| AT4G22080.1 | Thale cress | extracellular | 44.75 | 49.75 |
| AT4G22090.1 | Thale cress | extracellular | 44.29 | 49.24 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 51.14 | 47.16 |
| AT3G54920.1 | Thale cress | extracellular | 53.88 | 47.11 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 48.4 | 46.19 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 49.77 | 46.19 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 46.8 | 45.05 |
| AT5G04310.1 | Thale cress | plasma membrane | 52.51 | 44.4 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:826936 | UniProt:A0A178V021 | ProteinID:AEE83246.1 |
| ArrayExpress:AT4G13210 | EnsemblPlantsGene:AT4G13210 | RefSeq:AT4G13210 | TAIR:AT4G13210 | RefSeq:AT4G13210-TAIR-G | EnsemblPlants:AT4G13210.2 |
| TAIR:AT4G13210.2 | InterPro:AmbAllergen | Unigene:At.50334 | ProteinID:CAB41931.1 | ProteinID:CAB78363.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 |
| RefSeq:NP_001190715.1 | ProteinID:OAO99093.1 | PFAM:PF00544 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF34 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | UniProt:Q9SVQ6 | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0001E92F6C | SEG:seg | : | : | : | : |
Description
Putative pectate lyase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ6]
Coordinates
chr4:+:7669948..7673376
Molecular Weight (calculated)
48550.6 Da
IEP (calculated)
8.541
GRAVY (calculated)
-0.294
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVARTLFSI SATLIIFLAL FLHVNAVQET REPKHESSRN TSTVDNLSDG EWHEHAVKDP EEIAAMVDMS IRNSTYRRKL GFFSSCSTGN PIDDCWRCDK
101: KWHRRRKRLA DCAIGFGRNA VGGRDGRYYI VTDPSDHDPV TPKPGTLRYA VIQDEPLWIV FKRDMVITLS QELIMNSFKT IDGRGVNVHI AGGACLTVQY
201: VTNIIIHGIN IHDCKRTGNA MVRSSESHYG WRTMADGDGI SIFGSSHIWI DHNSLSSCAD GLIDAIMGST AITISNNYLT HHNEAILLGH TDSYTRDKMM
301: QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRFLAPGN RFAKEVTKRV GAGKGEWNNW NWRSQGDLML NGAYFTSSGA
401: GASANYARAS SLAAKSSSLV GMLTSSSGAL KCRIGTLC
101: KWHRRRKRLA DCAIGFGRNA VGGRDGRYYI VTDPSDHDPV TPKPGTLRYA VIQDEPLWIV FKRDMVITLS QELIMNSFKT IDGRGVNVHI AGGACLTVQY
201: VTNIIIHGIN IHDCKRTGNA MVRSSESHYG WRTMADGDGI SIFGSSHIWI DHNSLSSCAD GLIDAIMGST AITISNNYLT HHNEAILLGH TDSYTRDKMM
301: QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRFLAPGN RFAKEVTKRV GAGKGEWNNW NWRSQGDLML NGAYFTSSGA
401: GASANYARAS SLAAKSSSLV GMLTSSSGAL KCRIGTLC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.