Factsheet for GSMUA_Achr3P00290_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 7
vacuole 7
plasma membrane 6
golgi 6
nucleus 2
peroxisome 1
mitochondrion 1
unclear 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G002930.1	Barley	cytosol	58.15	87.23
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	75.18	85.83
GSMUA_Achr11P...	Banana	extracellular	72.99	82.42
GSMUA_Achr8P12860_001	Banana	cytosol	70.07	81.59
GSMUA_Achr5P15620_001	Banana	cytosol	69.59	81.48
GSMUA_Achr4P26690_001	Banana	extracellular	71.78	80.38
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	85.64	78.75
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	82.73	74.89
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	75.43	72.09
Zm00001d025067_P001	Maize	mitochondrion	77.62	70.26
Zm00001d004448_P001	Maize	endoplasmic reticulum	76.4	70.09
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	70.07	68.09
AT1G04680.1	Thale cress	extracellular	71.29	67.98
KRG90246	Soybean	nucleus	73.97	67.86
KRH33474	Soybean	nucleus	73.72	67.33
TraesCS2D01G018000.1	Wheat	golgi	77.13	67.02
PGSC0003DMT400076251	Potato	extracellular	72.99	66.96
Solyc09g091430.2.1	Tomato	nucleus	73.48	66.96
CDY61137	Canola	extracellular	70.07	66.82
CDX89799	Canola	extracellular	70.07	66.82
KXG25802	Sorghum	plastid	78.59	66.74
Bra015341.1-P	Field mustard	extracellular	69.83	66.59
TraesCS2A01G016500.1	Wheat	golgi	77.86	66.53
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	69.59	66.36
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	69.59	66.36
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	69.34	66.13
TraesCS2B01G024500.2	Wheat	golgi	77.37	66.11
Bra032494.1-P	Field mustard	extracellular	69.1	65.89
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	72.26	65.85
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	72.51	65.49
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	72.02	65.49
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	64.72	65.36
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	73.48	64.26
CDY18738	Canola	endoplasmic reticulum, extracellular	72.75	62.82
HORVU2Hr1G002880.2	Barley	mitochondrion	76.64	61.76
Bra015000.1-P	Field mustard	golgi, plasma membrane	63.75	58.61
CDY66697	Canola	endoplasmic reticulum, golgi	63.5	58.39
CDX77470	Canola	golgi, plasma membrane	63.99	57.3
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	62.77	57.08
GSMUA_Achr10P...	Banana	cytosol	47.45	56.36
GSMUA_Achr4P25120_001	Banana	extracellular	53.28	48.99
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	50.85	47.72
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	49.39	46.45
GSMUA_Achr10P...	Banana	extracellular	42.58	44.87
GSMUA_Achr1P03320_001	Banana	plasma membrane	53.53	43.05
GSMUA_Achr7P08840_001	Banana	nucleus	48.66	29.85

Protein Annotations

EnsemblPlants:GSMUA_Achr3P00290_001	EnsemblPlants:GSMUA_Achr3T00290_001	EnsemblPlantsGene:GSMUA_Achr3G00290_001	Gene3D:2.160.20.10	InterPro:IPR012334	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	PFAM:PF00544	SEG:seg
SignalP:SignalP-noTM	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000296556D	UniProt:M0SAJ7
MapMan:21.3.5.2	:	:	:	:	:

Description

Probable pectate lyase 15 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00290_001]

Coordinates

chr3:+:260962..264497

Molecular Weight (calculated)

44080.7 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.233

Length

411 amino acids

Sequence
(BLAST)

001: MAVCSRSNPT LLLLLLVGLM VALAGGLGWT GSERSSDSRN GGASRRISRE AAATSAASSM EARTATKMAE AAVDDPEEVA SAVHMSISNS TARRSLGYLS
101: CGTGNPIDDC WRCDPDWHLN RKTLADCGIG FGRNAIGGRD GEFYELIMNS FKTIDGRGAN VHIANGACIT IQYVTNVIIH GLHIHDCKPT GNAMVRSSPS
201: HYGWRTMADG DGVSIFGSSH VWVDHCSLSN CADGLVDAVM GSTAITVSNN YFTHHNEVML LGHSDSYERD KSMQVTIAFN HFGEGLIQRM PRCRHGYFHV
301: VNNDYTHWEM YAIGGSASPT INSQGNRYLA PTNPFAKEVT KRVDTDASLW KNWNWRSEGD LLLNGAYFTP SGAGASTSYA RASSLGAKPS SMVGTLTSDA
401: GALSCRAGTQ C

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.