Factsheet for VIT_10s0116g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11474	Soybean	extracellular	65.09	66.49
PGSC0003DMT400042395	Potato	extracellular	66.4	66.4
KRH36487	Soybean	extracellular	49.08	65.61
KRH02031	Soybean	extracellular	67.45	64.57
KRH36488	Soybean	extracellular	64.04	61.46
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	56.69	53.6
VIT_01s0137g00240.t01	Wine grape	extracellular	54.33	51.36
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	53.28	50.37
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	50.39	47.76
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	53.28	47.21
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	52.49	44.94
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.18	44.02
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	50.39	43.74
VIT_17s0000g05740.t01	Wine grape	extracellular	48.82	43.36
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	49.61	42.66
VIT_13s0019g04900.t01	Wine grape	extracellular	44.88	41.11
VIT_13s0019g04910.t01	Wine grape	extracellular	52.23	40.12
VIT_08s0007g04820.t01	Wine grape	plastid	51.18	39.88
CDY45254	Canola	endoplasmic reticulum	46.72	38.86
CDY09356	Canola	extracellular	46.46	38.73
CDY41679	Canola	endoplasmic reticulum, plasma membrane	46.19	38.51
Solyc02g080910.2.1	Tomato	extracellular	67.45	33.86
CDY70492	Canola	endoplasmic reticulum, extracellular	1.31	9.09
CDX96858	Canola	mitochondrion, nucleus	0.26	0.66
CDY09355	Canola	mitochondrion, nucleus	0.26	0.66
CDY53553	Canola	mitochondrion, nucleus	0.26	0.66
CDX81635	Canola	mitochondrion, nucleus	0.26	0.66
CDY41678	Canola	mitochondrion, nucleus	0.26	0.66
CDY45199	Canola	mitochondrion, nucleus	0.26	0.66
CDY45253	Canola	mitochondrion, nucleus	0.26	0.66
CDY66531	Canola	mitochondrion, nucleus	0.26	0.66

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100245293	wikigene:100245293	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:AM429030
InterPro:AmbAllergen	ProteinID:CAN60346	ProteinID:CAN60346.1	ProteinID:CCB48185	ProteinID:CCB48185.1	UniProt:F6H7G9
EMBL:FN595248	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	EntrezGene:LOC100245293	wikigene:LOC100245293	PFAM:PF00544	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002108A03	ArrayExpress:VIT_10s0116g01160	EnsemblPlantsGene:VIT_10s0116g01160	EnsemblPlants:VIT_10s0116g01160.t01
RefSeq:XP_002263615	RefSeq:XP_002263615.2	SEG:seg	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F6H7G9]

Coordinates

chr10:+:603711..605197

Molecular Weight (calculated)

42376.8 Da

IEP (calculated)

9.199

GRAVY (calculated)

-0.131

Length

381 amino acids

Sequence
(BLAST)

001: MAYTALFLVL SCTLAYYAST LQAYSSLDYT PQTFTSYMPS SSKSSTKKVM NPIDSCWRRK ANWASNRRAL ADCAVGFGKG AMGGKYGAMY VVTTPSDDPV
101: NPKPGTLRYG VIQTKPLWIV FAKDMVITLK NELIMNSFKT IDGRGAKVEI AYGPCITIQG VSHVIIHGIS IHDCKPGKSG LVRSTTMHVG HRLGSDGDAI
201: SIFTSSHVWI DHCYLASCTD GLIDVIHAST AITISNNYFS HHDKVMLFGH DDHFTADKVM SVTVAFNHFG TGLVQRMPRV RFGYAHLANN KYDEWEMYAI
301: GGSANPTILS EGNHFTAPDN ANTKEVTKRE VKSGWKNWKW RSSKDKFVNG AYFVHLDGEA VPRFTLDPKH FLLLMVQWFL L

Best Arabidopsis Sequence Match ( AT4G22080.1 )
(BLAST)

001: MTLFTVSCLL VVLFLCHSLV HAENNGYYGY TPTVANYLPE KPQNIMNPVD SCWRLKSDWA ANRKDLADCV VGFGSSTLGG KKGNLYVVTN PYDNAQNPQP
101: GSLRYGVIQA KPLWITFAKD MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKYGMVRS SPTHVGHRKG SDGDAIAIFG
201: SSNIWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHDK VMLLGHNDDF VQDVKMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA
301: DPTIFSEGNY FIASDKSNSK EVTKREVKGG WNNWRWRTSK DVFKNGAYFV PSGYGSISLP YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY

Arabidopsis Description

RHS14Probable pectate lyase 16 [Source:UniProtKB/Swiss-Prot;Acc:O65456]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.