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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76388 Canola extracellular 96.32 96.32
CDX82902 Canola endoplasmic reticulum, extracellular, vacuole 72.79 90.83
AT4G22080.1 Thale cress extracellular 87.25 90.36
CDX79122 Canola extracellular 87.75 89.28
AT4G22090.1 Thale cress extracellular 84.07 87.06
CDX98091 Canola extracellular 59.8 65.77
CDY30041 Canola extracellular 59.31 65.23
PGSC0003DMT400042396 Potato endoplasmic reticulum, extracellular, vacuole 61.27 62.97
CDY30040 Canola extracellular 53.68 61.52
CDX98092 Canola extracellular 53.43 61.24
CDY70583 Canola cytosol 32.6 54.73
CDY18330 Canola cytosol 18.87 52.74
CDY56220 Canola endoplasmic reticulum, extracellular, vacuole 50.98 51.23
CDY34310 Canola endoplasmic reticulum, vacuole 50.74 50.99
CDY08948 Canola endoplasmic reticulum, extracellular 50.74 50.99
CDY01846 Canola endoplasmic reticulum, extracellular, vacuole 50.74 50.99
CDY28857 Canola extracellular 50.74 50.86
CDY24847 Canola endoplasmic reticulum, extracellular 50.49 50.74
CDY12666 Canola extracellular 50.49 50.74
CDY32557 Canola extracellular 50.49 50.74
CDY03419 Canola endoplasmic reticulum, extracellular 50.25 50.49
CDY56520 Canola extracellular 50.25 50.37
CDY11033 Canola endoplasmic reticulum, extracellular 49.51 49.75
CDX92652 Canola endoplasmic reticulum, extracellular 49.26 49.51
CDY41506 Canola endoplasmic reticulum, extracellular, vacuole 49.75 49.15
CDY33938 Canola extracellular 49.51 48.44
CDY05655 Canola extracellular 49.51 48.44
CDX83690 Canola endoplasmic reticulum, extracellular, vacuole 48.77 48.3
CDY03964 Canola extracellular 48.77 48.3
CDY00156 Canola extracellular, plastid 48.53 48.06
CDY56668 Canola extracellular 49.02 47.85
CDY24654 Canola endoplasmic reticulum, extracellular, vacuole 48.77 47.84
CDY20049 Canola plastid, vacuole 48.28 47.82
CDY19932 Canola extracellular 48.77 47.61
CDY05305 Canola endoplasmic reticulum, extracellular, vacuole 48.53 47.6
CDX89799 Canola extracellular 49.51 46.87
CDY61137 Canola extracellular 49.51 46.87
CDY48132 Canola endoplasmic reticulum, golgi 49.02 46.73
CDY16732 Canola endoplasmic reticulum, golgi 48.77 46.5
CDY20748 Canola extracellular 43.63 45.88
CDY06557 Canola extracellular 43.38 45.74
CDY47327 Canola endoplasmic reticulum, extracellular 48.53 45.73
CDX86615 Canola endoplasmic reticulum, extracellular, golgi 48.28 45.71
CDY01119 Canola endoplasmic reticulum, extracellular 48.53 45.52
CDY15517 Canola endoplasmic reticulum, extracellular, golgi 48.04 45.48
CDY46471 Canola endoplasmic reticulum, extracellular 48.53 45.1
CDY65626 Canola golgi 50.0 44.93
CDY34149 Canola extracellular 39.46 44.85
CDY66697 Canola endoplasmic reticulum, golgi 48.77 44.52
CDY53564 Canola endoplasmic reticulum, extracellular, vacuole 49.26 44.18
CDY01151 Canola endoplasmic reticulum, extracellular, vacuole 48.77 44.03
CDX70244 Canola vacuole 46.81 43.31
CDX77470 Canola golgi, plasma membrane 48.28 42.92
CDY18738 Canola endoplasmic reticulum, extracellular 48.53 41.6
CDY04133 Canola extracellular 46.32 41.18
CDY17432 Canola extracellular 46.32 41.18
CDY07515 Canola endoplasmic reticulum, extracellular, vacuole 49.26 40.85
CDX67615 Canola endoplasmic reticulum, extracellular, vacuole 48.77 40.53
CDX77400 Canola endoplasmic reticulum, extracellular 48.28 40.04
CDY39314 Canola extracellular 44.85 39.87
CDY41679 Canola endoplasmic reticulum, plasma membrane 44.61 39.82
CDY09356 Canola extracellular 44.61 39.82
CDY45202 Canola extracellular 44.61 39.65
CDX78152 Canola extracellular 46.08 39.5
CDX73573 Canola extracellular 46.08 39.5
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 44.12 39.3
CDY45254 Canola endoplasmic reticulum 44.12 39.3
CDY03043 Canola extracellular 44.12 39.22
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 43.87 39.08
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 44.36 38.59
CDX85564 Canola extracellular 44.61 38.48
CDX74293 Canola endoplasmic reticulum, extracellular 44.36 38.43
CDX91953 Canola endoplasmic reticulum, extracellular 44.36 38.43
CDX67560 Canola plasma membrane 46.08 38.37
CDY11284 Canola extracellular, golgi 47.79 38.24
CDY56964 Canola endoplasmic reticulum, extracellular, vacuole 46.08 38.21
CDX81636 Canola endoplasmic reticulum 44.61 37.6
CDY63769 Canola extracellular 44.12 37.58
CDY41382 Canola endoplasmic reticulum, golgi 48.53 37.57
CDY58428 Canola endoplasmic reticulum, golgi, plastid 47.3 37.48
CDY53552 Canola extracellular 45.34 37.37
CDX78607 Canola endoplasmic reticulum, extracellular 43.14 37.05
CDX70590 Canola endoplasmic reticulum, extracellular 43.14 37.05
CDX73426 Canola endoplasmic reticulum, extracellular, vacuole 46.32 36.56
CDX69550 Canola endoplasmic reticulum, extracellular 44.61 36.47
CDY66593 Canola endoplasmic reticulum, extracellular 44.61 36.47
CDY13312 Canola plasma membrane 45.34 34.51
CDY70492 Canola endoplasmic reticulum, extracellular 0.98 7.27
CDY45253 Canola mitochondrion, nucleus 0.25 0.66
CDY45199 Canola mitochondrion, nucleus 0.25 0.66
CDY66531 Canola mitochondrion, nucleus 0.25 0.66
CDX81635 Canola mitochondrion, nucleus 0.25 0.66
CDY09355 Canola mitochondrion, nucleus 0.25 0.66
CDY41678 Canola mitochondrion, nucleus 0.25 0.66
CDX96858 Canola mitochondrion, nucleus 0.25 0.66
CDY04136 Canola mitochondrion, nucleus 0.25 0.66
CDY53553 Canola mitochondrion, nucleus 0.25 0.66
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2GO:A0A078GS55UniProt:A0A078GS55InterPro:AmbAllergen
EnsemblPlants:CDY27438ProteinID:CDY27438ProteinID:CDY27438.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829
GO:GO:0030570GO:GO:0045490GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00037422001InterPro:IPR012334PFAM:PF00544
PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF18InterPro:Pec_lyaseInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SMART:SM00656SUPFAM:SSF51126SignalP:SignalP-noTMTMHMM:TMhelixUniPathway:UPA00545UniParc:UPI0004EEAC9A
Description
BnaC03g64780DPectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A078GS55]
Coordinates
chrLK032204:-:374482..376241
Molecular Weight (calculated)
45079.8 Da
IEP (calculated)
9.154
GRAVY (calculated)
-0.201
Length
408 amino acids
Sequence
(BLAST)
001: MTLFSNICVF VALSLCQSLV LAINNGYYGF NPSVASYLPE KPQNIMNPVD SCWRHKSDWS ANRKDLADCA VGFGSSALGG KKGNIYVVTN PNDNAANPKP
101: GSLRYGVIQD KPLWITFAKD MVITLENELM VNSYKTIDGR GAKVEIAFGP CITIQQVTNV IVHGISIHDC KPAKYGMVRS STTHVGHRKG SDGDAIAISG
201: SSHIWIDHCF LASCTDGLID VIHASTGITI SNNYFTQHVK VMLLGHNDNF VQDVNMKVTV AFNHFGPRLV ERMPRQIIYN HVRKTLACRV RRGYAHVANN
301: RYDKWIMYAI GGSADPTIFS EGNYFIASDK SNSKEVTKRE VKGGWNNWRW RTSKDVFKNG AYFVPSGYGS VDLPYSSAQR FTVAPGNMVP SLTADAGPLN
401: CNRNLPCY
Best Arabidopsis Sequence Match ( AT4G22080.1 )
(BLAST)
001: MTLFTVSCLL VVLFLCHSLV HAENNGYYGY TPTVANYLPE KPQNIMNPVD SCWRLKSDWA ANRKDLADCV VGFGSSTLGG KKGNLYVVTN PYDNAQNPQP
101: GSLRYGVIQA KPLWITFAKD MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKYGMVRS SPTHVGHRKG SDGDAIAIFG
201: SSNIWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHDK VMLLGHNDDF VQDVKMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA
301: DPTIFSEGNY FIASDKSNSK EVTKREVKGG WNNWRWRTSK DVFKNGAYFV PSGYGSISLP YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY
Arabidopsis Description
RHS14Probable pectate lyase 16 [Source:UniProtKB/Swiss-Prot;Acc:O65456]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.