Factsheet for TraesCS6B01G187500.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 28628250

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G158300.1	Wheat	cytosol	99.5	99.5
TraesCS6D01G148700.2	Wheat	cytosol	99.5	93.22
Zm00001d015376_P002	Maize	cytosol	92.52	92.29
KXG29557	Sorghum	cytosol	91.77	91.54
Os02t0169300-01	Rice	extracellular, plasma membrane	91.52	91.29
TraesCS7B01G375300.1	Wheat	cytosol	88.53	88.53
KRH13759	Soybean	mitochondrion	72.07	86.01
GSMUA_Achr5P00330_001	Banana	cytosol	85.54	85.54
GSMUA_Achr11P...	Banana	cytosol	85.54	85.54
GSMUA_Achr1P25780_001	Banana	cytosol	85.29	85.29
GSMUA_Achr8P33470_001	Banana	cytosol	84.79	84.79
KRH13758	Soybean	peroxisome	12.72	78.46
TraesCS1B01G104200.1	Wheat	mitochondrion, peroxisome	25.69	74.1
HORVU6Hr1G031830.4	Barley	plasma membrane	99.25	72.89
CDX79325	Canola	cytosol	53.62	64.37
TraesCS1B01G325100.1	Wheat	golgi	81.55	57.57
TraesCS7B01G381700.1	Wheat	cytosol	6.73	17.42
TraesCS1B01G157400.1	Wheat	plastid	26.18	15.7

Protein Annotations

KEGG:00010+2.7.2.3	KEGG:00710+2.7.2.3	MapMan:2.1.1.5	Gene3D:3.40.50.1260	GO:GO:0003674	GO:GO:0003824
GO:GO:0004618	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
InterPro:IPR015824	HAMAP:MF_00145	PFAM:PF00162	PIRSF:PIRSF000724	PRINTS:PR00477	ScanProsite:PS00111
PANTHER:PTHR11406	PANTHER:PTHR11406:SF11	InterPro:Phosphoglycerate_kinase	InterPro:Phosphoglycerate_kinase_CS	InterPro:Phosphoglycerate_kinase_N	InterPro:Phosphoglycerate_kinase_sf
SUPFAM:SSF53748	EnsemblPlantsGene:TraesCS6B01G187500	EnsemblPlants:TraesCS6B01G187500.2	TIGR:cd00318	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:214025798..214028666

Molecular Weight (calculated)

42124.4 Da

IEP (calculated)

5.577

GRAVY (calculated)

0.155

Length

401 amino acids

Sequence
(BLAST)

001: MATKRSVGTL GEADLKGKKV FVRADLNVPL DDAQKITDDT RIRASIPTIK YLLEKGAKVI LASHLGRPKG VTPKFSLKPL VARLSELLGL EVVMAPDCIG
101: EEVEKLAAAL PDGGVLLLEN VRFYKEEEKN DPEFAKKLAS VADLYVNDAF GTAHRAHAST EGVTKFLRPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSSKIGVI ESLLAKVDIL ILGGGMIFTF YKAQGLAVGK SLVEEDKLEL ATSLIETAKS KGVKLLLPTD VVVADKFAAD AESKIVPATA IPDGWMGLDV
301: GPDSIKTFAE ALDTTKTVIW NGPMGVFEFE KFAAGTDAIA KQLAELTGKG VTTIIGGGDS VAAVEKAGLA DKMSHISTGG GASLELLEGK PLPGVLALDE
401: A

Best Arabidopsis Sequence Match ( AT1G79550.1 )
(BLAST)

001: MATKRSVGTL KEADLKGKSV FVRVDLNVPL DDNSNITDDT RIRAAVPTIK YLMGNGSRVV LCSHLGRPKG VTPKYSLKPL VPRLSELLGV EVVMANDSIG
101: EEVQKLVAGL PEGGVLLLEN VRFYAEEEKN DPEFAKKLAA LADVYVNDAF GTAHRAHAST EGVAKFLKPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSTKIGVI ESLLNTVDIL LLGGGMIFTF YKAQGLSVGS SLVEEDKLDL AKSLMEKAKA KGVSLLLPTD VVIADKFAPD ANSKIVPATA IPDGWMGLDI
301: GPDSIKTFSE ALDTTKTIIW NGPMGVFEFD KFAAGTEAVA KQLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK PLPGVLALDE
401: A

Arabidopsis Description

PGK3Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178WHC3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.