Factsheet for VIT_12s0035g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51256	Soybean	plasma membrane	34.06	63.22
KRH36702	Soybean	plasma membrane	32.64	62.68
PGSC0003DMT400047024	Potato	plasma membrane	28.98	62.62
Solyc01g102710.2.1	Tomato	plasma membrane	32.37	62.36
KRH11702	Soybean	plasma membrane	32.42	62.07
PGSC0003DMT400047023	Potato	plasma membrane	32.04	61.99
Solyc01g102700.2.1	Tomato	plasma membrane	33.35	59.78
KRH51255	Soybean	plasma membrane	29.8	58.71
KRH36704	Soybean	plastid	28.38	58.04
VIT_08s0056g00100.t01	Wine grape	plasma membrane	29.2	55.67
Zm00001d004558_P001	Maize	cytosol, extracellular, plastid	3.33	53.98
Solyc10g054300.1.1	Tomato	cytosol, nucleus, plastid	4.2	46.67
VIT_19s0014g05320.t01	Wine grape	cytosol	4.69	37.89
VIT_06s0004g08250.t01	Wine grape	plasma membrane	17.74	33.89
VIT_06s0004g06030.t01	Wine grape	cytosol	8.08	33.71
VIT_11s0118g00210.t01	Wine grape	plasma membrane	8.19	29.47
VIT_08s0056g00570.t01	Wine grape	plasma membrane	17.58	18.78
VIT_15s0046g01830.t01	Wine grape	mitochondrion, plastid	8.46	13.89

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100262527	wikigene:100262527	EntrezGene:100267686	wikigene:100267686	MapMan:18.4.1.8.1
Gene3D:3.30.200.20	Gene3D:3.80.10.10	ProteinID:CCB54988	ProteinID:CCB54988.1	UniProt:F6HJY5	EMBL:FN595990
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100262527	wikigene:LOC100262527	EntrezGene:LOC100267686	wikigene:LOC100267686	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00069	PFAM:PF07714	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS51450	PANTHER:PTHR27003	PANTHER:PTHR27003:SF134	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002107F9B	ArrayExpress:VIT_12s0035g02090	EnsemblPlantsGene:VIT_12s0035g02090	EnsemblPlants:VIT_12s0035g02090.t01	unigene:Vvi.23896
RefSeq:XP_002269419	RefSeq:XP_002269419.1	RefSeq:XP_002269453	RefSeq:XP_002269453.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:22416952..22432647

Molecular Weight (calculated)

200747.0 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.143

Length

1832 amino acids

Sequence
(BLAST)

0001: MDSRLILVSL LIVFIQISAT WARTNTDDAT ALVALKDLWE NYPPSWVGFD PCGSSWEGIG CYNQRVISII LTSMGLKGGL SGDLDQLSEL QILDLSYNKN
0101: LTGNIPASIG SLKKLTNLIL VGCSFSGPIP DTIGSLTELV FLSLNSNSFS GGIPPSIGNL SKLYWLDLAD NQLTGTIPIS NGSTPGLDKL THTKHFHFGK
0201: NRLSGSIPPK LFSSNMILIH LLLESNRLTG SIPSTLGLLK TLEVVRLDGN SLSGPVPSNL NNLTEVKDLF LSNNKLTGTV PDLTGMNSLN YMDMSNNSFD
0301: VSNVPSWLST LQSLTTLTME NTNLKGAIPA SLFSLPQLQT VSLRNNIING TLDFGAGYSS QLQLVDLQKN YIVAFTERAG HDVEIILVEN PICLEGPKNE
0401: KYCMTSQPDF SYSTPPNNCV PSVCSSDQIP SPNCICAYPY MGTLVFRAPS FSNLGNSSYY ISLEQRLMQS FQSQQLPVDS VFLADLMKDS NNYLQVSLKV
0501: FPHGRDRFNR TGISMVGFAL SNQTFKPPST FGPFYFNGEQ YQYFEEVSLS LEPNKSSNTG IIIGAAVGGS LLVLLLLFAG VYAFRQKRRA ERATEQSNPF
0601: ANWDESKGSG GIPQLKGARR FTFEEIKKCT NNFSDVNDVG SGGYGKVYRA TLPTGQMVAI KRAKQESMQG GLEFKTEIEL LSRVHHKNVV SLIGFCFQLG
0701: EQILIYEYVP NGSLKESLSG RSGIRLDWRR RLKVALGSAR GLAYLHELAD PPIIHRDIKS NNILLDEHLN AKVGDFGLCK LLADSEKGHV TTQVKGTMGY
0801: MDPEYYMSQQ LTEKSDVYSF GVLMLELISA RKPIERGKYI VKEVKIAMDK TKDLYNLQGL LDPTLGTTLG GFNKFVDLAL RCVEESGADR PTMGEVVKEI
0901: ENIMQLAGLN PITESSSASA SYEESSTGTS SHPYGSNSAF DTTALKSLLK NLPFTWVGAD PCVNGWEGIG CSNGRVISMD LSYNKGLTGN IPASIGSLKS
1001: LTNLILMGCS FSGQIPDTIG SLTNLVVLSL NSNSFSGVIP PSIGNLYNLN WLDITENQIT GTIPISNGGT PGLDMLTQMK HFHFGKNRLS GPIPPQLFSS
1101: KMTMIHLLLD NNHLTGSIPP TLGLATTLEI IRLDRNLLSG PVPSNLNNLT SLTELLLSNN NLTGTVPNLT GMNHLSYLDM SQNNFEVSDF PSWFSTLLSL
1201: TTLTMEFTKL TGDIPVALFS LPQLQTVKLR NNQITGTLEF GSAYNSHLRL VDLQKNYISE FKPGLEYEFK IILVGNPMCQ DEGNEKYCTP AQPNSSYSTQ
1301: PKHSCIIPFC SSDLILGPNC SCAYPYIGTL VFRAPSFSNS GDSSDYKSIE QFLMQLFRSL QLPVDTVSLS NSTMVDDYLK VNLKVFPQGQ DRFNRTGIFL
1401: VGFALSNQTS AFSFIADPYQ HFEEVPSPPG AKKSSNTGII VGATTGGSFL ALLLLFAGVY AFSQKRRAER ATKQSNPFAK WDQRKGSGGI PQLKGARQFT
1501: FEEIKKCTNN FSEANNVGSG GYGKVYRGIL PTGQMVAIKR AKQESMQGGL EFKTELELLS RVHHKNVVGL VGFCFEHGEQ MLVYEFVPNG SLKESLSGKS
1601: GIRLDWRKRL KVALCSARGL AYLHELAEPP IIHRDIKSNN ILLDERLNAK VADFGLCKLL ADSEKGHVTT QVKGTMGYLD PEYYMSQQLT EKSDVYSFGV
1701: LMLELISARK PIERGKYIVK EVKIEMDKTK DLYNLQGLLD PTLGTTLGGF NKFVDLALRC VEESGADRPR MGEVVKEIEN IMQLAGLNPI IESSSASASY
1801: EESSTGTSSH PYGNNSAFDN SVGYSPSTVQ PK

Best Arabidopsis Sequence Match ( AT5G49760.1 )
(BLAST)

001: MSSRTGASLL LILFFFQICS VSALTNGLDA SALNALKSEW TTPPDGWEGS DPCGTNWVGI TCQNDRVVSI SLGNLDLEGK LPADISFLSE LRILDLSYNP
101: KLSGPLPPNI GNLGKLRNLI LVGCSFSGQI PESIGTLKEL IYLSLNLNKF SGTIPPSIGL LSKLYWFDIA DNQIEGELPV SNGTSAPGLD MLLQTKHFHF
201: GKNKLSGNIP KELFSSNMSL IHVLFDGNQF TGEIPETLSL VKTLTVLRLD RNKLIGDIPS YLNNLTNLNE LYLANNRFTG TLPNLTSLTS LYTLDVSNNT
301: LDFSPIPSWI SSLPSLSTLR MEGIQLNGPI PISFFSPPQL QTVILKRNSI VESLDFGTDV SSQLEFVDLQ YNEITDYKPS ANKVLQVILA NNPVCLEAGN
401: GPSYCSAIQH NTSFSTLPTN CSPCEPGMEA SPTCRCAYPF MGTLYFRSPS FSGLFNSTNF SILQKAIADF FKKFNYPVDS VGVRNIRENP TDHQLLIDLL
501: VFPLGRESFN QTGMSLVGFA FSNQTYKPPP IFGPYIFKAD LYKQFSDVEV SSKSSNKSIL IGAVVGVVVL LLLLTIAGIY ALRQKKRAER ATGQNNPFAK
601: WDTSKSSIDA PQLMGAKAFT FEELKKCTDN FSEANDVGGG GYGKVYRGIL PNGQLIAIKR AQQGSLQGGL EFKTEIELLS RVHHKNVVRL LGFCFDRNEQ
701: MLVYEYISNG SLKDSLSGKS GIRLDWTRRL KIALGSGKGL AYLHELADPP IIHRDIKSNN ILLDENLTAK VADFGLSKLV GDPEKTHVTT QVKGTMGYLD
801: PEYYMTNQLT EKSDVYGFGV VLLELLTGRS PIERGKYVVR EVKTKMNKSR SLYDLQELLD TTIIASSGNL KGFEKYVDLA LRCVEEEGVN RPSMGEVVKE
901: IENIMQLAGL NPNSDSATSS RTYEDAIKGS GDPYGSESFQ YSGNFPASKL EPQ

Arabidopsis Description

At5g49760 [Source:UniProtKB/TrEMBL;Acc:Q8GZ99]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.