Factsheet for VIT_06s0004g06030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98306	Soybean	cytosol, plastid	63.33	61.37
KRH16995	Soybean	plastid	63.1	60.48
KRH72632	Soybean	mitochondrion	61.96	59.39
KRH30349	Soybean	cytosol, mitochondrion, nucleus, plastid	61.05	59.29
GSMUA_Achr1P17280_001	Banana	cytosol	53.08	55.74
Bra002607.1-P	Field mustard	plastid	52.85	49.15
AT5G58940.1	Thale cress	cytosol, nucleus, plastid	51.48	48.09
HORVU3Hr1G085360.4	Barley	plastid	46.24	46.67
TraesCS3A01G366500.1	Wheat	mitochondrion, plastid	46.47	46.15
TraesCS3D01G359400.1	Wheat	mitochondrion	46.01	46.01
TraesCS3B01G398100.1	Wheat	mitochondrion	46.24	45.72
Solyc03g078470.2.1	Tomato	cytosol	20.05	45.6
PGSC0003DMT400047464	Potato	cytosol	57.18	45.23
CDY54184	Canola	plasma membrane, vacuole	45.33	44.82
KXG33712	Sorghum	plastid	45.56	43.67
TraesCS5D01G501800.1	Wheat	plastid	44.87	42.73
Os03t0825800-01	Rice	plasma membrane	39.86	39.5
TraesCS5B01G501300.2	Wheat	plastid	43.96	39.39
EER90604	Sorghum	plastid	38.95	39.22
Zm00001d012929_P002	Maize	plastid	38.04	38.22
VIT_11s0118g00210.t01	Wine grape	plasma membrane	40.09	34.58
CDX80322	Canola	mitochondrion	52.85	25.69
VIT_15s0046g01830.t01	Wine grape	mitochondrion, plastid	54.67	21.51
VIT_08s0056g00100.t01	Wine grape	plasma membrane	35.76	16.34
VIT_06s0004g08250.t01	Wine grape	plasma membrane	32.8	15.02
VIT_08s0056g00570.t01	Wine grape	plasma membrane	33.49	8.57
VIT_12s0035g02090.t01	Wine grape	plasma membrane	33.71	8.08
VIT_19s0014g05320.t01	Wine grape	cytosol	1.82	3.52

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100256996	wikigene:100256996	MapMan:18.4.1.34	Gene3D:3.30.200.20	ProteinID:CBI16008
ProteinID:CBI16008.3	UniProt:D7SK32	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004683	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0042542	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100256996	wikigene:LOC100256996	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27003	PANTHER:PTHR27003:SF63	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	TIGR:TC68968	UniParc:UPI0001BE0D23	ArrayExpress:VIT_06s0004g06030	EnsemblPlantsGene:VIT_06s0004g06030	EnsemblPlants:VIT_06s0004g06030.t01
unigene:Vvi.10004	unigene:Vvi.25645	RefSeq:XP_002280660	RefSeq:XP_002280660.2	:	:

Description

No Description!

Coordinates

chr6:-:6832432..6835121

Molecular Weight (calculated)

49294.9 Da

IEP (calculated)

10.086

GRAVY (calculated)

-0.560

Length

439 amino acids

Sequence
(BLAST)

001: MKHISEMERP STPHKYHQKN QSALNYIKAA AKKLAGVFST LAFLTRPTKT ASKGAPATPD GSRNYGQPPG ISCSNNKRSS RFKYSDSYGS SNAASGQLVT
101: ENFSIEEINK ATQNFSQANK IGEGGFGTVY KGRLGNGSLV AIKRAKKNMY DKRLSQEFKN EILTLSRIEH LNLVKLLGYL EHKDERIIII EYIGNGTLRE
201: HLDGTQGLEI AERLDIAIDV AHAVAYLHMY TDTPIIHRDI KASNILITEK LRAKVADFGF ARLAAEDPGA THISTQIKGT AGYLDPEYLR TYQLTEKSDV
301: YSFGVLLVEM VTGRHPIESK RPLSERVTTR WAMERLKEGD AVLAMDPKLR RNPASNQAVE RVLKLARQCL APLRQSRPSM RKCAEVLWGI RKDFREKAFS
401: YSPCPSSHRS DNFLNKDARK NRHHAFGLED CDNYKFVSA

Best Arabidopsis Sequence Match ( AT5G58940.2 )
(BLAST)

001: MPMRSKTPTP LRFSNGKHQR DDSEYSWTDV GTGEKARNVS VLGAIRRAAK KVFVIIFLGQ RKLKPTECRS DPGESSTHDR ESTLSGWTGY SSPSSFGRST
101: ERKVSGQYRF SGSRFQSPGK DSSSSKSWHQ GPVIFSFGEL QRATANFSSV HQIGEGGFGT VFKGKLDDGT IVAIKRARKN NYGKSWLLEF KNEIYTLSKI
201: EHMNLVKLYG FLEHGDEKVI VVEYVANGNL REHLDGLRGN RLEMAERLEI AIDVAHALTY LHTYTDSPII HRDIKASNIL ITNKLRAKVA DFGFARLVSE
301: DLGATHISTQ VKGSAGYVDP DYLRTFQLTD KSDVYSFGVL LVEILTGRRP IELKRPRKDR LTVKWALRRL KDDEAVLIMD PFLKRNRAAI EVAEKMLRLA
401: SECVTPTRAT RPAMKGIAEK LWAIRREMKE TMICSSASNS SCSSTTHSFI GRDSDRYALP RIEDNENSIE

Arabidopsis Description

CRCK1Calmodulin-binding receptor-like cytoplasmic kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIL7]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.