Factsheet for VIT_15s0046g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g012170.2.1	Tomato	plastid	27.78	70.94
PGSC0003DMT400049974	Potato	plastid	27.6	70.48
Bra037331.1-P	Field mustard	plastid	22.76	62.87
CDY07228	Canola	plastid	22.85	62.65
KRH06617	Soybean	cytosol	50.36	61.96
AT4G00330.2	Thale cress	plastid	22.31	60.58
TraesCS4D01G312400.1	Wheat	plastid	23.12	60.28
GSMUA_Achr5P10620_001	Banana	plastid	23.12	59.86
TraesCS4B01G315400.1	Wheat	plastid	22.85	59.58
HORVU4Hr1G080110.9	Barley	plastid	22.76	59.48
TraesCS4A01G414700.1	Wheat	plastid	23.12	59.31
KRH48103	Soybean	cytosol	54.93	59.0
CDY68957	Canola	cytosol, plasma membrane	22.31	58.59
Os03t0148700-01	Rice	plasma membrane	22.31	57.91
EER95499	Sorghum	plastid	22.04	57.75
Zm00001d027676_P001	Maize	cytosol, plastid	17.92	55.56
GSMUA_Achr1P03260_001	Banana	plastid	23.12	55.01
VIT_06s0004g06030.t01	Wine grape	cytosol	21.51	54.67
HORVU6Hr1G091790.4	Barley	peroxisome, plastid	19.8	48.25
TraesCS6D01G383700.1	Wheat	plastid	19.71	47.41
TraesCS6A01G399500.1	Wheat	peroxisome, plastid	19.71	47.11
EES07775	Sorghum	plastid	19.62	47.1
Os02t0821400-01	Rice	cytosol, mitochondrion, nucleus, plastid	19.18	45.34
Zm00001d051887_P001	Maize	plastid	19.53	43.34
TraesCS6B01G439700.1	Wheat	plastid	19.71	43.22
VIT_11s0118g00210.t01	Wine grape	plasma membrane	17.11	37.52
VIT_08s0056g00100.t01	Wine grape	plasma membrane	14.78	17.17
VIT_06s0004g08250.t01	Wine grape	plasma membrane	14.16	16.48
VIT_08s0056g00570.t01	Wine grape	plasma membrane	15.41	10.03
VIT_12s0035g02090.t01	Wine grape	plasma membrane	13.89	8.46
VIT_19s0014g05320.t01	Wine grape	cytosol	0.9	4.41

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:100253398	wikigene:100253398	EntrezGene:100261848	wikigene:100261848
MapMan:18.4.1.34	Gene3D:3.30.200.20	EMBL:AM427594	EMBL:AM463545	ProteinID:CAN61522	ProteinID:CAN61522.1
ProteinID:CAN75716	ProteinID:CAN75716.1	ProteinID:CCB62465	ProteinID:CCB62465.1	UniProt:F6I669	EMBL:FN596755
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0016787	GO:GO:0019538	GO:GO:0043231	GO:GO:0090305	InterPro:IPR000719	InterPro:IPR002885
InterPro:IPR011990	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100253398	wikigene:LOC100253398	EntrezGene:LOC100261848	wikigene:LOC100261848
PFAM:PF00069	PFAM:PF01535	PFAM:PF13041	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF398	InterPro:Pentatricopeptide_repeat	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC58237	TIGR:TC63647	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210AB5C	ArrayExpress:VIT_15s0046g01830	EnsemblPlantsGene:VIT_15s0046g01830	EnsemblPlants:VIT_15s0046g01830.t01	unigene:Vvi.10744
RefSeq:XP_002276073	RefSeq:XP_002276073.1	RefSeq:XP_002278521	RefSeq:XP_002278521.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:18657101..18665933

Molecular Weight (calculated)

123525.0 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.079

Length

1116 amino acids

Sequence
(BLAST)

0001: MISKCRFLST FIANFKSHSS ASPTPSPTLT GATKNAPSHD PHRQSHSFPY LGGLRASLPE TGFTNLVDSC STHSFSSHAL KISAKLGFLH GGKQLHAHVI
0101: KLGNCNLLSL QNQVLHVYVK CKEFNDVCKM FDEMPLKNVV SWNTLICGVV EGNCKFALVR LGFHYFRQMV LEMMAPNCIT LNGLLRASIE LNDVGICRQL
0201: HCFILKSGFD SNCFVGSALV DSYAKFGLVD EAQSAFDEVS SRDLVLWNVM VSCYALNGVQ GKAFGVFKLM RLEGVKGDNF TFTSMINSCG VLGSCGLGKQ
0301: VHGLIIRLSF DLDVLVASAL VDMYSKNENI EDARKAFDGM IVKNIVSWTT MIVGYGQHGD GKEAMRLLQE MIRVYTYPDE LALASILSSC GNLSATSEVV
0401: QVHAYVVENG FEAFLSIANA LVSAYSKCGS IGSAFQSFSS VAEPDIISWT SLMGAYAFHG LSKEGVEVFE KMLFSNVRPD KVAFLGVLSA CAHGGFVLEG
0501: LHYFNLMINV YQIMPDSEHY TCIIDLLGRA GFLDEAINLL TSMPVEPRSD TLGAFLGACK VHRNVGLARW ASEKLFVMEP NEPANYSLMS NMYASVGHWF
0601: DVARVRKLMR ERCDFKVPGC SWMEIAGEVH TFVSRDKTHP RAVQVYGMLD LLVRLMEEDD VSDMEVLGLS LAETMKNPNL MYGNRNHGSG ARRTPDRLTY
0701: SPSTVDYDAS SIQKSRSGRN PMMMAVKSVA GVFVSCFTPP ETTSSKNFGD SDEFRAPSVA SDVSRAGSVR RRVSGSSHGI YANSYNSTHG REPGSVKFTL
0801: EEIYKATRNF SPSWKIGQGG FGTVYKGRLE DGTLVAVKRA KKSLYDKHLG VEFQSEIQTL AQVEHLNLVR FYGYLEHGDE RIVVVEYVPN GTLREHLDCV
0901: QGNILDFAAR LDVAIDVAHA ITYLHMYTDH PIIHRDIKSS NILLTENLRA KVADFGFARL AADTESGATH VSTQVKGTAG YLDPEYLRTY QLTEKSDVYS
1001: FGVLLVELVT GRCPIEAKRE LPERITAKWA MKKFTDGDAI FTLDPRLERN AANNLALEKI LELALQCLAP QKQNRPSMRR CAEILWSIRK DHRELSASDT
1101: RSLSSHSQKS IQLREG

Best Arabidopsis Sequence Match ( AT2G46050.1 )
(BLAST)

001: MRFTFLRSTR IFLANHQNHL SSLQNIRTIP SSSSSPVAIS SVSKLSASLD HLSDVKQEHG FMVKQGIYNS LFLQNKLLQA YTKIREFDDA DKLFDEMPLR
101: NIVTWNILIH GVIQRDGDTN HRAHLGFCYL SRILFTDVSL DHVSFMGLIR LCTDSTNMKA GIQLHCLMVK QGLESSCFPS TSLVHFYGKC GLIVEARRVF
201: EAVLDRDLVL WNALVSSYVL NGMIDEAFGL LKLMGSDKNR FRGDYFTFSS LLSACRIEQG KQIHAILFKV SYQFDIPVAT ALLNMYAKSN HLSDARECFE
301: SMVVRNVVSW NAMIVGFAQN GEGREAMRLF GQMLLENLQP DELTFASVLS SCAKFSAIWE IKQVQAMVTK KGSADFLSVA NSLISSYSRN GNLSEALLCF
401: HSIREPDLVS WTSVIGALAS HGFAEESLQM FESMLQKLQP DKITFLEVLS ACSHGGLVQE GLRCFKRMTE FYKIEAEDEH YTCLIDLLGR AGFIDEASDV
501: LNSMPTEPST HALAAFTGGC NIHEKRESMK WGAKKLLEIE PTKPVNYSIL SNAYVSEGHW NQAALLRKRE RRNCYNPKTP GCSWLGDYSI

Arabidopsis Description

PCMP-E39Pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O82363]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.