Factsheet for VIT_19s0014g05320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G536900.1	Wheat	extracellular	64.32	46.2
VIT_06s0004g08250.t01	Wine grape	plasma membrane	100.0	23.67
GSMUA_Achr6P32410_001	Banana	plasma membrane	79.74	19.19
AT1G06840.1	Thale cress	plasma membrane, vacuole	78.85	18.78
Bra015533.1-P	Field mustard	plasma membrane	78.41	18.76
CDY54882	Canola	plasma membrane	78.41	18.76
CDY10230	Canola	plasma membrane	77.97	18.57
TraesCS7A01G130100.2	Wheat	plasma membrane	74.45	18.51
Os01t0960400-01	Rice	plasma membrane	77.09	18.38
Solyc09g055570.2.1	Tomato	plasma membrane	74.01	18.06
TraesCS3B01G602700.1	Wheat	plasma membrane	74.89	17.99
TraesCS3D01G542300.1	Wheat	plasma membrane	74.89	17.91
TraesCS7B01G030400.1	Wheat	plasma membrane	74.89	17.88
TraesCS7D01G129500.1	Wheat	plasma membrane	74.89	17.86
HORVU7Hr1G027310.14	Barley	plasma membrane	74.45	17.71
HORVU3Hr1G117890.7	Barley	plasma membrane	74.01	16.55
Zm00001d004559_P021	Maize	plasma membrane	73.13	14.94
KXG25749	Sorghum	plastid	29.96	9.32
VIT_08s0056g00100.t01	Wine grape	plasma membrane	37.0	8.74
VIT_08s0056g00570.t01	Wine grape	plasma membrane	58.59	7.76
VIT_12s0035g02090.t01	Wine grape	plasma membrane	37.89	4.69
VIT_11s0118g00210.t01	Wine grape	plasma membrane	5.29	2.36
VIT_06s0004g06030.t01	Wine grape	cytosol	3.52	1.82
VIT_15s0046g01830.t01	Wine grape	mitochondrion, plastid	4.41	0.9

Protein Annotations

EntrezGene:100243448	wikigene:100243448	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM455078	ProteinID:CAN63355
ProteinID:CAN63355.1	ProteinID:CCB46481	ProteinID:CCB46481.1	UniProt:F6H2D0	EMBL:FN595229	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100243448	wikigene:LOC100243448
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13855	PANTHER:PTHR27003	PANTHER:PTHR27003:SF101	SUPFAM:SSF52058
UniParc:UPI00021086E3	ArrayExpress:VIT_19s0014g05320	EnsemblPlantsGene:VIT_19s0014g05320	EnsemblPlants:VIT_19s0014g05320.t01	RefSeq:XP_002279624	RefSeq:XP_002279624.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:5714949..5715632

Molecular Weight (calculated)

25210.2 Da

IEP (calculated)

6.680

GRAVY (calculated)

-0.319

Length

227 amino acids

Sequence
(BLAST)

001: MQILDFMWNN ITGSIPKEIG NITTLELLLL NGNKLTGSLP EELGNLPNLD RIQIDQNQIS GSIPRSFANL NKTKHFHMNN NSISGQIPSE LSRLPELVHF
101: LLDNNNLSGY LPPEFSEMPK LLIVQLDNNH FNGSIPASYS NMSKLLKLSL RNCSLQGEIP NLSKIPYLGY LDLSSNQLNG TIPPGRFSEN ITTIDLSNNN
201: LTGTIPANFS GLPHLQKLSL ENKKYSN

Best Arabidopsis Sequence Match ( AT1G06840.1 )
(BLAST)

001: MFSTHHVSRL LIPLLFFFLF CCFSSTFAQD DITNPVEVRA LRVIKESLND PVHRLRNWKH GDPCNSNWTG VVCFNSTLDD GYLHVSELQL FSMNLSGNLS
101: PELGRLSRLT ILSFMWNKIT GSIPKEIGNI KSLELLLLNG NLLNGNLPEE LGFLPNLDRI QIDENRISGP LPKSFANLNK TKHFHMNNNS ISGQIPPELG
201: SLPSIVHILL DNNNLSGYLP PELSNMPRLL ILQLDNNHFD GTTIPQSYGN MSKLLKMSLR NCSLQGPVPD LSSIPNLGYL DLSQNQLNGS IPAGKLSDSI
301: TTIDLSNNSL TGTIPTNFSG LPRLQKLSLA NNALSGSIPS RIWQERELNS TESIIVDLRN NGFSNISGRS DLRPNVTVWL QGNPLCSDGN LLRLCGPITE
401: EDINQGSTNS NTTICSDCPP PYEFSPEPLR RCFCAAPLLV GYRLKSPGFS DFVPYRSEFE QYITSGLSLN LYQLRLDSFQ WQKGPRLRMY LKFFPVFGSN
501: ANNSFIFNRS EVRRIRGMFT GWNIRDEDLF GPYELMNFTL LDVYRDVFPS ASPSGLSNGA VAGIVLGSVA AAVTLTAIIA LIIMRKRMRG YSAVARRKRS
601: SKASLKIEGV KSFTYAELAL ATDNFNSSTQ IGQGGYGKVY KGTLGSGTVV AIKRAQEGSL QGEKEFLTEI ELLSRLHHRN LVSLLGFCDE EGEQMLVYEY
701: MENGTLRDNI SVKLKEPLDF AMRLRIALGS AKGILYLHTE ANPPIFHRDI KASNILLDSR FTAKVADFGL SRLAPVPDME GISPQHVSTV VKGTPGYLDP
801: EYFLTHQLTD KSDVYSLGVV LLELFTGMQP ITHGKNIVRE INIAYESGSI LSTVDKRMSS VPDECLEKFA TLALRCCREE TDARPSMAEV VRELEIIWEL
901: MPESHVAKTA DLSETMTHPS SSSNSSIMKH HYTSMDVSGS DLVSGVAPSV APR

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Source:UniProtKB/Swiss-Prot;Acc:C0LGD7]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.