Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037894_P001 | Maize | cytosol | 25.0 | 50.6 |
| Zm00001d010119_P001 | Maize | extracellular | 36.76 | 38.46 |
| Zm00001d045321_P001 | Maize | cytosol | 36.76 | 38.34 |
| Zm00001d010102_P001 | Maize | cytosol | 35.59 | 37.46 |
| Zm00001d010105_P001 | Maize | cytosol | 35.29 | 37.15 |
| EER87862 | Sorghum | cytosol | 29.41 | 25.77 |
| Os11t0451700-00 | Rice | plastid | 23.53 | 24.54 |
| TraesCS4D01G063100.1 | Wheat | cytosol | 23.53 | 18.6 |
| TraesCS4A01G250900.1 | Wheat | cytosol | 23.24 | 17.36 |
| TraesCS4B01G064200.1 | Wheat | cytosol | 22.65 | 16.85 |
Protein Annotations
| EnsemblPlants:Zm00001d010094_P001 | EnsemblPlants:Zm00001d010094_T001 | EnsemblPlantsGene:Zm00001d010094 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 |
| GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF9 | PFAM:PF00257 |
| ProteinID:AQK93417.1 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg | UniParc:UPI00084436DF | UniProt:A0A1D6FP59 |
| MapMan:35.2 | : | : | : | : | : |
Description
Dehydrin family protein expressed; Embryogenic-cell protein 40 (Ecp40); protein
Coordinates
chr8:+:99105737..99112998
Molecular Weight (calculated)
34879.7 Da
IEP (calculated)
8.284
GRAVY (calculated)
-0.640
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MHATGMRTTT GTGAHGATGM LDTGVLGGGG HAATGMPAGH DTRPGATGVA GTGGAFPHAA EHKTGGGILR RSGSSSSSSS SSSEDDGMGG RRKKGLKEKI
101: KEKMPGGHRE GQGQATATGA YGGIGYVAGP TTGGPHEKKG VMEKIPGGHK DYDQHQHTTA ATGGGGGYGG ATDTTYGTTT EGTHEKKGFM EKIKEKLPVH
201: QRFLLTGVQV GLDPADPVPP IAEKHVNAAG GSVNQPGDNA KLGGAGGSPQ CRLAEGSVAE ELLGQVPGLI TDEYMSRVPE NSWTVPEVPS PPTASGLNWH
301: GNLCFPAYDS TMFVPEITSL QNSQSHFTVP SSFKRRRREY
101: KEKMPGGHRE GQGQATATGA YGGIGYVAGP TTGGPHEKKG VMEKIPGGHK DYDQHQHTTA ATGGGGGYGG ATDTTYGTTT EGTHEKKGFM EKIKEKLPVH
201: QRFLLTGVQV GLDPADPVPP IAEKHVNAAG GSVNQPGDNA KLGGAGGSPQ CRLAEGSVAE ELLGQVPGLI TDEYMSRVPE NSWTVPEVPS PPTASGLNWH
301: GNLCFPAYDS TMFVPEITSL QNSQSHFTVP SSFKRRRREY
001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
Arabidopsis Description
RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.