Factsheet for Os11t0451700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0454000-01	Rice	cytosol	29.14	57.93
Os11t0454200-01	Rice	plastid	29.14	57.93
Os11t0454300-01	Rice	plastid	30.06	56.98
Os11t0453900-01	Rice	nucleus	26.07	56.29
Zm00001d010102_P001	Maize	cytosol	41.72	42.11
Zm00001d010105_P001	Maize	cytosol	41.41	41.8
Zm00001d010119_P001	Maize	extracellular	41.41	41.54
Zm00001d045321_P001	Maize	cytosol	41.41	41.41
EER87862	Sorghum	cytosol	44.17	37.11
TraesCS4D01G063100.1	Wheat	cytosol	47.24	35.81
TraesCS4B01G064200.1	Wheat	cytosol	48.77	34.79
TraesCS4A01G250900.1	Wheat	cytosol	45.09	32.31
Zm00001d010094_P001	Maize	cytosol	24.54	23.53

Protein Annotations

MapMan:35.2	EntrezGene:4350448	ProteinID:AAX95254.1	ProteinID:ABA93397.1	ProteinID:BAF28201.1	ProteinID:BAT13905.1
InterPro:Dehydrin	InterPro:Dehydrin_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009415	GO:GO:0009628
GO:GO:0009631	GO:GO:0009719	GO:GO:0009737	EnsemblPlantsGene:Os11g0451700	EnsemblPlants:Os11t0451700-00	PFAM:PF00257
ScanProsite:PS00315	ScanProsite:PS00823	PANTHER:PTHR33346	PANTHER:PTHR33346:SF3	UniProt:Q53JR9	UniParc:UPI00005096DE
RefSeq:XP_015615559.1	SEG:seg	:	:	:	:

Description

DEHYDRIN 6Similar to Dehydrin DHN1 (M3) (RAB-17 protein). (Os11t0451700-00)

Coordinates

chr11:-:15223376..15224746

Molecular Weight (calculated)

31253.6 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.687

Length

326 amino acids

Sequence
(BLAST)

001: MAHFQGQQHG HPAARVDEYG NPVAAGHGIT GTQEAGAGGY GAAGNVAQPQ HAFGGATDAG GYGRQAGYGA TGTGTHDAAG YGGSGQPAYG ATGTGVHDAG
101: GLMPGHTAGH GTTGTGVHHG AGAGLPAGQT AGYGTTGVTG AQHGAGGLGT GHTAGYGTTG AHHGAGGLGT RHMAGHGATT TPDTMAYGTT GTGAPHGATA
201: GTGAYPHAGG QFQPAREEHK TGGILRRSGS SSSSSSSEDD GMGGRRKKGI KEKIKEKLPG GNKGGQQQPT ATAATGGYGA GTGHTAAAGT TTDAGGTAYT
301: PTTQPTHEKK GMMEKIKEKL PGGGHH

Best Arabidopsis Sequence Match ( AT5G66400.1 )
(BLAST)

001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR

Arabidopsis Description

RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.