Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010119_P001 | Maize | extracellular | 95.09 | 95.38 |
| Zm00001d010102_P001 | Maize | cytosol | 94.17 | 95.05 |
| Zm00001d010105_P001 | Maize | cytosol | 93.86 | 94.74 |
| Zm00001d037894_P001 | Maize | cytosol | 28.83 | 55.95 |
| EER87862 | Sorghum | cytosol | 53.68 | 45.1 |
| Os11t0451700-00 | Rice | plastid | 41.41 | 41.41 |
| Zm00001d010094_P001 | Maize | cytosol | 38.34 | 36.76 |
| TraesCS4D01G063100.1 | Wheat | cytosol | 40.49 | 30.7 |
| TraesCS4A01G250900.1 | Wheat | cytosol | 38.96 | 27.91 |
| TraesCS4B01G064200.1 | Wheat | cytosol | 38.04 | 27.13 |
Protein Annotations
| EMBL:BT037688 | EnsemblPlants:Zm00001d045321_P001 | EnsemblPlants:Zm00001d045321_T001 | EnsemblPlantsGene:Zm00001d045321 | EntrezGene:100216961 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009415 | GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 |
| PANTHER:PTHR33346:SF9 | PFAM:PF00257 | ProteinID:AQL02048.1 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg |
| UniParc:UPI00017B69EF | UniProt:B4FKQ0 | MapMan:35.2 | : | : | : |
Description
Dehydrin family protein expressed; Embryogenic-cell protein 40 (Ecp40); protein
Coordinates
chr9:-:18926278..18927731
Molecular Weight (calculated)
31692.2 Da
IEP (calculated)
8.134
GRAVY (calculated)
-0.798
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHYQQGRRQ QVDEYGNPVP GGHGVQGQQL GEAAGGYGVA GTGSYGGQQQ AGYGPTGTGT HDAGGYDGSD HPGYGATGTG VDDAGGPGAY GAATGTRAHG
101: THGGVTGIQD GAAGLTGGGL HGATGMGTTT GTGAHGATGM LDTGVLGGGG HAATGMPAGH GTRPGATGVA GTGGAFPHAA EHKTGGGILR RSGSSSSSSS
201: SSSEDDGMGG RRKKGLKEKI KEKMPGGHRE GQGQATATGA YGGTGYVAGP TTGGPHEKKG VVEKIKEKIP GGHKDYDQHQ HTTAATGGGG GYGGTTDTTY
301: GTTTTEGTHE KKGFMDKIKE KLPGQH
101: THGGVTGIQD GAAGLTGGGL HGATGMGTTT GTGAHGATGM LDTGVLGGGG HAATGMPAGH GTRPGATGVA GTGGAFPHAA EHKTGGGILR RSGSSSSSSS
201: SSSEDDGMGG RRKKGLKEKI KEKMPGGHRE GQGQATATGA YGGTGYVAGP TTGGPHEKKG VVEKIKEKIP GGHKDYDQHQ HTTAATGGGG GYGGTTDTTY
301: GTTTTEGTHE KKGFMDKIKE KLPGQH
001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
Arabidopsis Description
RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.