Factsheet for Zm00001d010119_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010102_P001	Maize	cytosol	95.38	95.98
Zm00001d010105_P001	Maize	cytosol	95.08	95.67
Zm00001d045321_P001	Maize	cytosol	95.38	95.09
Zm00001d037894_P001	Maize	cytosol	28.62	55.36
EER87862	Sorghum	cytosol	52.92	44.33
Os11t0451700-00	Rice	plastid	41.54	41.41
Zm00001d010094_P001	Maize	cytosol	38.46	36.76
TraesCS4D01G063100.1	Wheat	cytosol	40.31	30.47
TraesCS4A01G250900.1	Wheat	cytosol	38.15	27.25
TraesCS4B01G064200.1	Wheat	cytosol	37.85	26.91

Protein Annotations

EnsemblPlants:Zm00001d010119_P001	EnsemblPlants:Zm00001d010119_T001	EnsemblPlantsGene:Zm00001d010119	GO:GO:0006950	GO:GO:0008150	GO:GO:0009415
GO:GO:0009628	InterPro:Dehydrin	InterPro:Dehydrin_CS	PANTHER:PTHR33346	PANTHER:PTHR33346:SF9	PFAM:PF00257
ProteinID:AQK93452.1	ScanProsite:PS00315	ScanProsite:PS00823	SEG:seg	UniParc:UPI0008438144	UniProt:A0A1D6FP95
MapMan:35.2	:	:	:	:	:

Description

Dehydrin family protein expressed; Embryogenic-cell protein 40 (Ecp40); protein

Coordinates

chr8:+:99981285..99982498

Molecular Weight (calculated)

31772.5 Da

IEP (calculated)

9.273

GRAVY (calculated)

-0.735

Length

325 amino acids

Sequence
(BLAST)

001: MAHYQQGRRQ QVDEYGNLVP GGHGVQGQQL GESAGGYGVA GTGSYGGQQQ AGYGPTGTGT HDTRGYGGSG HPGYGVTGTG VHDAGGPGAY GAATGTRAHD
101: THGGVTGIQD GAAGLTGGGL HGAIGMGTTA GTGAHGATGM LDTGVLGGGG HAATGMPAGH GTRPGATGVA GTGGAFPHAA EHKTGGGILR RSGSSSSSSS
201: SSSEDDGMGG RRKKGLKEKI KEKMLGGHRE GQGQATATGA YGGTGYVAGL TTGGPHEKKG VVEKIKEKIP GGHKDYDQHQ HTTAATGGGG GYGGTTDTTY
301: GTTTEGTHEK KGFMEKIKEK LPGQH

Best Arabidopsis Sequence Match ( AT5G66400.1 )
(BLAST)

001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR

Arabidopsis Description

RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.