Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra014138.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 72.87 | 90.38 |
CDY41829 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 88.37 | 88.37 |
CDX77312 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 87.6 | 87.6 |
AT3G17780.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 83.72 | 83.72 |
KRH48690 | Soybean | endoplasmic reticulum | 69.77 | 69.77 |
KRH39019 | Soybean | endoplasmic reticulum, extracellular, golgi | 67.44 | 67.44 |
Solyc03g097970.2.1 | Tomato | nucleus | 65.12 | 65.12 |
Os03t0240700-01 | Rice | endoplasmic reticulum, extracellular, golgi | 65.12 | 65.12 |
Solyc06g072440.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 64.34 | 64.34 |
PGSC0003DMT400083982 | Potato | endoplasmic reticulum, extracellular, golgi | 64.34 | 64.34 |
VIT_01s0011g06130.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 63.57 | 63.57 |
PGSC0003DMT400069274 | Potato | endoplasmic reticulum, extracellular, golgi | 63.57 | 63.57 |
EER92575 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 61.24 | 61.24 |
GSMUA_Achr8P30800_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 60.47 | 60.47 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 58.91 | 58.91 |
TraesCS4D01G229700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 55.81 | 55.81 |
TraesCS4A01G072700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 55.04 | 55.04 |
Zm00001d028375_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 61.24 | 54.48 |
HORVU4Hr1G064080.1 | Barley | mitochondrion | 55.04 | 39.66 |
AT5G17190.1 | Thale cress | endoplasmic reticulum, extracellular | 38.76 | 38.46 |
AT3G03160.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 37.98 | 37.69 |
TraesCS4B01G228600.1 | Wheat | cytosol | 37.98 | 23.9 |
Protein Annotations
MapMan:35.2 | EntrezGene:841265 | ProteinID:AEE32292.1 | ArrayExpress:AT1G48440 | EnsemblPlantsGene:AT1G48440 | RefSeq:AT1G48440 |
TAIR:AT1G48440 | RefSeq:AT1G48440-TAIR-G | EnsemblPlants:AT1G48440.1 | TAIR:AT1G48440.1 | EMBL:AY085827 | InterPro:BAP29/BAP31 |
EMBL:BT002443 | EMBL:BT008440 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 | GO:GO:0008150 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0070973 | RefSeq:NP_564527.1 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12701 | PANTHER:PTHR12701:SF32 | UniProt:Q8LDS7 | TMHMM:TMhelix |
UniParc:UPI00000AC1B2 | SEG:seg | : | : | : | : |
Description
At1g48440 [Source:UniProtKB/TrEMBL;Acc:Q8LDS7]
Coordinates
chr1:+:17906871..17908534
Molecular Weight (calculated)
14978.6 Da
IEP (calculated)
8.701
GRAVY (calculated)
0.322
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQWLILSY VVAVEVVITL VLTLPYPMLL KKRVVQLVSL ILQPAASIVA FAGFQLLDIY WKAEHRLSCS SEVCTATERD RYEKSIYKAQ RNVVLCAAGI
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.