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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • endoplasmic reticulum 6
  • golgi 5
  • extracellular 6
  • vacuole 4
  • plasma membrane 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014138.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 72.87 90.38
CDY41829 Canola endoplasmic reticulum, extracellular, plasma membrane 88.37 88.37
CDX77312 Canola endoplasmic reticulum, extracellular, plasma membrane 87.6 87.6
AT3G17780.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 83.72 83.72
KRH48690 Soybean endoplasmic reticulum 69.77 69.77
KRH39019 Soybean endoplasmic reticulum, extracellular, golgi 67.44 67.44
Solyc03g097970.2.1 Tomato nucleus 65.12 65.12
Os03t0240700-01 Rice endoplasmic reticulum, extracellular, golgi 65.12 65.12
Solyc06g072440.2.1 Tomato endoplasmic reticulum, extracellular, golgi 64.34 64.34
PGSC0003DMT400083982 Potato endoplasmic reticulum, extracellular, golgi 64.34 64.34
VIT_01s0011g06130.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 63.57 63.57
PGSC0003DMT400069274 Potato endoplasmic reticulum, extracellular, golgi 63.57 63.57
EER92575 Sorghum endoplasmic reticulum, extracellular, plasma membrane 61.24 61.24
GSMUA_Achr8P30800_001 Banana endoplasmic reticulum, extracellular, plasma membrane 60.47 60.47
GSMUA_Achr11P... Banana endoplasmic reticulum, extracellular, plasma membrane 58.91 58.91
TraesCS4D01G229700.1 Wheat endoplasmic reticulum, extracellular, vacuole 55.81 55.81
TraesCS4A01G072700.1 Wheat endoplasmic reticulum, extracellular, vacuole 55.04 55.04
Zm00001d028375_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 61.24 54.48
HORVU4Hr1G064080.1 Barley mitochondrion 55.04 39.66
AT5G17190.1 Thale cress endoplasmic reticulum, extracellular 38.76 38.46
AT3G03160.1 Thale cress endoplasmic reticulum, extracellular, vacuole 37.98 37.69
TraesCS4B01G228600.1 Wheat cytosol 37.98 23.9
Protein Annotations
MapMan:35.2EntrezGene:841265ProteinID:AEE32292.1ArrayExpress:AT1G48440EnsemblPlantsGene:AT1G48440RefSeq:AT1G48440
TAIR:AT1G48440RefSeq:AT1G48440-TAIR-GEnsemblPlants:AT1G48440.1TAIR:AT1G48440.1EMBL:AY085827InterPro:BAP29/BAP31
EMBL:BT002443EMBL:BT008440GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006810GO:GO:0006886GO:GO:0006888GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0070973RefSeq:NP_564527.1PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PANTHER:PTHR12701PANTHER:PTHR12701:SF32UniProt:Q8LDS7TMHMM:TMhelix
UniParc:UPI00000AC1B2SEG:seg::::
Description
At1g48440 [Source:UniProtKB/TrEMBL;Acc:Q8LDS7]
Coordinates
chr1:+:17906871..17908534
Molecular Weight (calculated)
14978.6 Da
IEP (calculated)
8.701
GRAVY (calculated)
0.322
Length
129 amino acids
Sequence
(BLAST)
001: MALQWLILSY VVAVEVVITL VLTLPYPMLL KKRVVQLVSL ILQPAASIVA FAGFQLLDIY WKAEHRLSCS SEVCTATERD RYEKSIYKAQ RNVVLCAAGI
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.