Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g097970.2.1 | Tomato | nucleus | 99.22 | 99.22 |
| PGSC0003DMT400069274 | Potato | endoplasmic reticulum, extracellular, golgi | 89.15 | 89.15 |
| KRH48690 | Soybean | endoplasmic reticulum | 79.84 | 79.84 |
| KRH39019 | Soybean | endoplasmic reticulum, extracellular, golgi | 77.52 | 77.52 |
| VIT_01s0011g06130.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 74.42 | 74.42 |
| Os03t0240700-01 | Rice | endoplasmic reticulum, extracellular, golgi | 70.54 | 70.54 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 70.54 | 70.54 |
| Bra014138.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 55.81 | 69.23 |
| Bra022243.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| Bra021273.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| CDY46882 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| CDY71089 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| GSMUA_Achr8P30800_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| CDX75928 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.22 | 68.22 |
| CDX82347 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.22 | 68.22 |
| CDX92160 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.22 | 68.22 |
| CDX95822 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.22 | 68.22 |
| CDX75934 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.44 | 67.44 |
| CDY41829 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.44 | 67.44 |
| EER92575 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 67.44 | 67.44 |
| AT3G17780.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 66.67 |
| CDX77312 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.89 | 65.89 |
| Bra001681.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 66.67 | 64.66 |
| CDX75929 | Canola | plasma membrane | 46.51 | 64.52 |
| AT1G48440.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 64.34 | 64.34 |
| TraesCS4A01G072700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 62.79 | 62.79 |
| TraesCS4D01G229700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 62.02 | 62.02 |
| Zm00001d028375_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 65.89 | 58.62 |
| HORVU4Hr1G064080.1 | Barley | mitochondrion | 61.24 | 44.13 |
| PGSC0003DMT400040457 | Potato | endoplasmic reticulum, extracellular, vacuole | 36.43 | 36.15 |
| PGSC0003DMT400060734 | Potato | endoplasmic reticulum, extracellular, vacuole | 36.43 | 35.88 |
| PGSC0003DMT400075817 | Potato | endoplasmic reticulum, golgi | 11.63 | 29.41 |
| TraesCS4B01G228600.1 | Wheat | cytosol | 46.51 | 29.27 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400083982 | EnsemblPlantsGene:PGSC0003DMG400033690 | EntrezGene:102600005 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:BAP29/BAP31 | PANTHER:PTHR12701 | PANTHER:PTHR12701:SF20 | PGSC:PGSC0003DMG400033690 | RefSeq:XP_006363986.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000295979D | UniProt:M1D7G5 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400033690]
Coordinates
chr3:-:45297276..45300721
Molecular Weight (calculated)
14989.6 Da
IEP (calculated)
8.350
GRAVY (calculated)
0.279
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQWMILTY VVAAEAAIAI LLTLPSPKAI KSRFVSLISL TLQPSLFIIP FAGFQLLDIY WKNEHRLMCT GEICTAAERD RYERSIYKAQ RNAILCVAAC
101: LLYWCIYRVC KYYKEIQSVE EVEKRLKDE
101: LLYWCIYRVC KYYKEIQSVE EVEKRLKDE
001: MALQWLILSY VVAVEVVITL VLTLPYPMLL KKRVVQLVSL ILQPAASIVA FAGFQLLDIY WKAEHRLSCS SEVCTATERD RYEKSIYKAQ RNVVLCAAGI
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
Arabidopsis Description
At1g48440 [Source:UniProtKB/TrEMBL;Acc:Q8LDS7]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.