Factsheet for TraesCS4B01G228600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G229700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.9	69.77
TraesCS4A01G072700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.41	68.99
Os03t0240700-01	Rice	endoplasmic reticulum, extracellular, golgi	35.61	56.59
HORVU4Hr1G064080.1	Barley	mitochondrion	47.8	54.75
EER92575	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	33.66	53.49
CDX75929	Canola	plasma membrane	23.9	52.69
VIT_01s0011g06130.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	30.73	48.84
GSMUA_Achr8P30800_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	30.73	48.84
Bra014138.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	24.39	48.08
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	30.24	48.06
Solyc03g097970.2.1	Tomato	nucleus	29.76	47.29
PGSC0003DMT400069274	Potato	endoplasmic reticulum, extracellular, golgi	29.76	47.29
PGSC0003DMT400083982	Potato	endoplasmic reticulum, extracellular, golgi	29.27	46.51
KRH48690	Soybean	endoplasmic reticulum	29.27	46.51
Zm00001d028375_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	32.68	46.21
Solyc06g072440.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	28.78	45.74
KRH39019	Soybean	endoplasmic reticulum, extracellular, golgi	27.8	44.19
CDY46882	Canola	endoplasmic reticulum, extracellular, plasma membrane	26.34	41.86
Bra021273.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	26.34	41.86
CDY71089	Canola	endoplasmic reticulum, extracellular, plasma membrane	26.34	41.86
CDY41829	Canola	endoplasmic reticulum, extracellular, plasma membrane	25.85	41.09
AT3G17780.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	25.85	41.09
CDX77312	Canola	endoplasmic reticulum, extracellular, plasma membrane	25.37	40.31
Bra022243.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.37	40.31
CDX75934	Canola	endoplasmic reticulum, extracellular, plasma membrane	24.88	39.53
CDX75928	Canola	endoplasmic reticulum, extracellular, plasma membrane	24.88	39.53
CDX82347	Canola	endoplasmic reticulum, extracellular, vacuole	24.88	39.53
CDX92160	Canola	endoplasmic reticulum, extracellular, plasma membrane	24.88	39.53
CDX95822	Canola	endoplasmic reticulum, extracellular, plasma membrane	24.88	39.53
Bra001681.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	24.88	38.35
AT1G48440.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	23.9	37.98
TraesCS6B01G327100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	19.51	30.3

Protein Annotations

EnsemblPlants:TraesCS4B01G228600.1	EnsemblPlantsGene:TraesCS4B01G228600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
InterPro:BAP29/BAP31	PANTHER:PTHR12701	PANTHER:PTHR12701:SF20	SEG:seg	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr4B:+:479226644..479228851

Molecular Weight (calculated)

22933.6 Da

IEP (calculated)

7.573

GRAVY (calculated)

-0.204

Length

205 amino acids

Sequence
(BLAST)

001: MEPSQGPESD RIESLADEAN RRGEGRKETD ATVIHLSTLL VATRDTHSFL SQDYTYRRNR GPPSSRASNF FHFDRSRKRV VPMGLQWMLL TCVVGAEAAV
101: AALLTLPAPR AVRAQIVGLT SMLLQPMAAV LPFAAFQLLD IYWKNEHRLI CTGEMCTSEE RVRFEKSVNF QVPEECHPLC FSIYPLLVHL SHLQVQQGHQ
201: GTGGG

Best Arabidopsis Sequence Match ( AT1G48440.1 )
(BLAST)

001: MALQWLILSY VVAVEVVITL VLTLPYPMLL KKRVVQLVSL ILQPAASIVA FAGFQLLDIY WKAEHRLSCS SEVCTATERD RYEKSIYKAQ RNVVLCAAGI
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE

Arabidopsis Description

At1g48440 [Source:UniProtKB/TrEMBL;Acc:Q8LDS7]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.