Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083982 | Potato | endoplasmic reticulum, extracellular, golgi | 99.22 | 99.22 |
| Solyc06g072440.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 89.92 | 89.92 |
| KRH48690 | Soybean | endoplasmic reticulum | 80.62 | 80.62 |
| KRH39019 | Soybean | endoplasmic reticulum, extracellular, golgi | 78.29 | 78.29 |
| VIT_01s0011g06130.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 75.19 | 75.19 |
| Os03t0240700-01 | Rice | endoplasmic reticulum, extracellular, golgi | 71.32 | 71.32 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 71.32 | 71.32 |
| Bra014138.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 56.59 | 70.19 |
| Bra022243.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 69.77 | 69.77 |
| Bra021273.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 69.77 | 69.77 |
| CDY46882 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.77 | 69.77 |
| CDY71089 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.77 | 69.77 |
| GSMUA_Achr8P30800_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 69.77 | 69.77 |
| CDX75928 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| CDX82347 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.99 | 68.99 |
| CDX92160 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| CDX95822 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.99 | 68.99 |
| CDX75934 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.22 | 68.22 |
| CDY41829 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.22 | 68.22 |
| EER92575 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 68.22 | 68.22 |
| AT3G17780.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 67.44 | 67.44 |
| CDX77312 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 66.67 |
| CDX75929 | Canola | plasma membrane | 47.29 | 65.59 |
| Bra001681.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 67.44 | 65.41 |
| AT1G48440.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 65.12 | 65.12 |
| TraesCS4A01G072700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 63.57 | 63.57 |
| TraesCS4D01G229700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 62.79 | 62.79 |
| Zm00001d028375_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 59.31 |
| HORVU4Hr1G064080.1 | Barley | mitochondrion | 62.02 | 44.69 |
| Solyc04g007920.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 41.09 | 40.46 |
| Solyc11g011010.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 37.21 | 36.92 |
| Solyc04g014490.1.1 | Tomato | nucleus | 37.21 | 36.64 |
| TraesCS4B01G228600.1 | Wheat | cytosol | 47.29 | 29.76 |
Protein Annotations
| EnsemblPlants:Solyc03g097970.2.1 | EnsemblPlantsGene:Solyc03g097970.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0070973 | InterPro:BAP29/BAP31 | PANTHER:PTHR12701 | PANTHER:PTHR12701:SF20 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002768596 | UniProt:K4BJL4 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3:+:60339379..60342725
Molecular Weight (calculated)
14961.6 Da
IEP (calculated)
8.349
GRAVY (calculated)
0.284
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQWMILTY VVAAEAAIAI LLTLPSPKAI KSRFVSLISL TLQPSLFIIP FAGFQLLDIY WKNEHRLMCT GEICTAAERD RYEKSIYKAQ RNAILCVAAC
101: LLYWCIYRVC KYYKEIQSVE EVEKRLKDE
101: LLYWCIYRVC KYYKEIQSVE EVEKRLKDE
001: MALQWLILSY VVAVEVVITL VLTLPYPMLL KKRVVQLVSL ILQPAASIVA FAGFQLLDIY WKAEHRLSCS SEVCTATERD RYEKSIYKAQ RNVVLCAAGI
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE
Arabidopsis Description
At1g48440 [Source:UniProtKB/TrEMBL;Acc:Q8LDS7]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.