CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	extracellular

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39019	Soybean	endoplasmic reticulum, extracellular, golgi	93.8	93.8
Solyc03g097970.2.1	Tomato	nucleus	80.62	80.62
PGSC0003DMT400083982	Potato	endoplasmic reticulum, extracellular, golgi	79.84	79.84
Solyc06g072440.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	79.07	79.07
PGSC0003DMT400069274	Potato	endoplasmic reticulum, extracellular, golgi	78.29	78.29
CDX82347	Canola	endoplasmic reticulum, extracellular, vacuole	73.64	73.64
CDY71089	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.64	73.64
CDY46882	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.64	73.64
CDX75928	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.64	73.64
Bra022243.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	73.64	73.64
Bra021273.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	73.64	73.64
CDX75929	Canola	plasma membrane	52.71	73.12
Bra014138.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	58.91	73.08
CDX75934	Canola	endoplasmic reticulum, extracellular, plasma membrane	72.87	72.87
CDX92160	Canola	endoplasmic reticulum, extracellular, plasma membrane	72.87	72.87
CDX95822	Canola	endoplasmic reticulum, extracellular, plasma membrane	72.87	72.87
Bra001681.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	72.87	70.68
Os03t0240700-01	Rice	endoplasmic reticulum, extracellular, golgi	70.54	70.54
VIT_01s0011g06130.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	70.54	70.54
CDY41829	Canola	endoplasmic reticulum, extracellular, plasma membrane	69.77	69.77
AT1G48440.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	69.77	69.77
GSMUA_Achr8P30800_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	68.99	68.99
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	68.99	68.99
CDX77312	Canola	endoplasmic reticulum, extracellular, plasma membrane	68.99	68.99
AT3G17780.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	68.99	68.99
EER92575	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	65.89	65.89
TraesCS4A01G072700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	63.57	63.57
TraesCS4D01G229700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	63.57	63.57
Zm00001d028375_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	65.12	57.93
HORVU4Hr1G064080.1	Barley	mitochondrion	62.79	45.25
KRH60355	Soybean	nucleus	41.09	40.77
KRH41659	Soybean	nucleus	41.09	40.77
TraesCS4B01G228600.1	Wheat	cytosol	46.51	29.27

Protein Annotations

EntrezGene:100779979	MapMan:35.2	EMBL:ACUP02004266	InterPro:BAP29/BAP31	EnsemblPlantsGene:GLYMA_07G105900	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006810
GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0070973
UniProt:I1KJ86	EnsemblPlants:KRH48690	ProteinID:KRH48690	ProteinID:KRH48690.1	PANTHER:PTHR12701	PANTHER:PTHR12701:SF32
TMHMM:TMhelix	UniParc:UPI00023387D4	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:10259075..10263547

Molecular Weight (calculated)

14894.5 Da

IEP (calculated)

8.724

GRAVY (calculated)

0.266

Length

129 amino acids

Sequence
(BLAST)

001: MALQWLILTY VVAAEAAVAI LLTLPTPKLL RDRFASLVSL ILQPALFIVP FAGFQLLDIY WKNEHRLMCT SEVCTAAERD RYEKSIYKAQ RNVILCVTAC
101: LLYWSISRIC KYQKEIQSLE EGEKRIKSH

Best Arabidopsis Sequence Match ( AT1G48440.1 )
(BLAST)

001: MALQWLILSY VVAVEVVITL VLTLPYPMLL KKRVVQLVSL ILQPAASIVA FAGFQLLDIY WKAEHRLSCS SEVCTATERD RYEKSIYKAQ RNVVLCAAGI
101: LLYWCIYRIC KYNKDLERLE ATEKRFKEE

Arabidopsis Description

At1g48440 [Source:UniProtKB/TrEMBL;Acc:Q8LDS7]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.