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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
 nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G17190.1 KRH42483 AT2G01950.1 19000166
AT5G17190.1 KRH58580 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH60355 Soybean nucleus 93.85 93.85
VIT_01s0011g05590.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 90.77 90.77
AT5G17190.1 Thale cress endoplasmic reticulum, extracellular 88.46 88.46
CDY02730 Canola endoplasmic reticulum, extracellular, vacuole 87.69 87.69
AT3G03160.1 Thale cress endoplasmic reticulum, extracellular, vacuole 86.15 86.15
Bra001074.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 84.62 84.62
CDX92034 Canola endoplasmic reticulum, extracellular, plasma membrane 83.85 83.85
CDY43146 Canola endoplasmic reticulum, extracellular, vacuole 83.08 83.08
CDX74224 Canola endoplasmic reticulum, extracellular, vacuole 83.08 83.08
CDY28742 Canola endoplasmic reticulum, extracellular, vacuole 82.31 82.31
Solyc04g014490.1.1 Tomato nucleus 80.77 80.15
PGSC0003DMT400060734 Potato endoplasmic reticulum, extracellular, vacuole 80.77 80.15
Bra008573.1-P Field mustard extracellular, plasma membrane 79.23 79.23
CDX69398 Canola extracellular, plasma membrane 78.46 78.46
Solyc11g011010.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 78.46 78.46
PGSC0003DMT400040457 Potato endoplasmic reticulum, extracellular, vacuole 78.46 78.46
GSMUA_Achr6P04330_001 Banana endoplasmic reticulum, extracellular, vacuole 75.38 75.38
PGSC0003DMT400075817 Potato endoplasmic reticulum, golgi 29.23 74.51
TraesCS6D01G277300.1 Wheat endoplasmic reticulum, extracellular, vacuole 75.38 74.24
TraesCS6B01G327100.1 Wheat endoplasmic reticulum, extracellular, vacuole 75.38 74.24
TraesCS6A01G297400.1 Wheat endoplasmic reticulum, extracellular, vacuole 75.38 74.24
Solyc04g007920.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 74.62 74.05
Os02t0734900-01 Rice plastid 74.62 73.48
EES07301 Sorghum endoplasmic reticulum, extracellular, plasma membrane 73.85 72.73
GSMUA_Achr5P24620_001 Banana endoplasmic reticulum, extracellular, vacuole 68.46 72.36
Zm00001d017956_P001 Maize endoplasmic reticulum, extracellular, vacuole 73.08 71.97
Zm00001d051803_P001 Maize endoplasmic reticulum, extracellular, vacuole 71.54 70.45
GSMUA_Achr7P12460_001 Banana endoplasmic reticulum, extracellular, plasma membrane 70.77 70.23
Bra032012.1-P Field mustard plastid 83.08 60.34
HORVU6Hr1G073910.1 Barley cytosol, plastid 75.38 49.75
Bra023599.1-P Field mustard plasma membrane 87.69 47.9
CDX85472 Canola plasma membrane 87.69 41.76
KRH48690 Soybean endoplasmic reticulum 40.77 41.09
KRH39019 Soybean endoplasmic reticulum, extracellular, golgi 38.46 38.76
Protein Annotations
EntrezGene:100785159MapMan:35.2EMBL:ACUP02004777InterPro:BAP29/BAP31ncoils:CoilEnsemblPlantsGene:GLYMA_08G042700
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0006810GO:GO:0006886GO:GO:0006888GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0070973UniProt:I1KQ72EnsemblPlants:KRH41659ProteinID:KRH41659ProteinID:KRH41659.1PANTHER:PTHR12701
PANTHER:PTHR12701:SF12TMHMM:TMhelixUniParc:UPI0002338AF1:::
Description
hypothetical protein
Coordinates
chr8:+:3378860..3380370
Molecular Weight (calculated)
14978.7 Da
IEP (calculated)
9.198
GRAVY (calculated)
0.357
Length
130 amino acids
Sequence
(BLAST)
001: MALEWVVLGY VAAAEAIMVI LLTIPGLEAL RKGLIAVTRN LLKPFLSVVP FCLFLFMDIY WKYETRPSCE GDSCTPSEHL RHQKSIMKSQ RNALLIAAAL
101: LFYWLLYSVT NLVVRIDHLN QRLERLKNRD
Best Arabidopsis Sequence Match ( AT5G17190.1 )
(BLAST)
001: MALEWVVLGY AAAAEAIMVI LLTMPGLDAL RKGLVAVTRN LLKPFLSIIP FCLFLLMDIY WKYETRPSCD GDSCTPSEHL RHQKSIMKSQ RNALLIASAL
101: VFYWILYSVT NLVVRIEQLN QRVERLKNKD
Arabidopsis Description
B-cell receptor-associated-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ0]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.