Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17190.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075817 | Potato | endoplasmic reticulum, golgi | 38.17 | 98.04 |
| Solyc04g014490.1.1 | Tomato | nucleus | 77.86 | 77.86 |
| Solyc11g011010.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 76.34 | 76.92 |
| AT5G17190.1 | Thale cress | endoplasmic reticulum, extracellular | 75.57 | 76.15 |
| CDY02730 | Canola | endoplasmic reticulum, extracellular, vacuole | 74.81 | 75.38 |
| KRH41659 | Soybean | nucleus | 74.05 | 74.62 |
| KRH60355 | Soybean | nucleus | 74.05 | 74.62 |
| AT3G03160.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 73.28 | 73.85 |
| CDX74224 | Canola | endoplasmic reticulum, extracellular, vacuole | 72.52 | 73.08 |
| CDX92034 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 72.52 | 73.08 |
| CDY43146 | Canola | endoplasmic reticulum, extracellular, vacuole | 72.52 | 73.08 |
| Bra001074.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 72.52 | 73.08 |
| CDY28742 | Canola | endoplasmic reticulum, extracellular, vacuole | 71.76 | 72.31 |
| VIT_17s0000g02020.t01 | Wine grape | endoplasmic reticulum | 71.76 | 71.76 |
| GSMUA_Achr6P04330_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 70.99 | 71.54 |
| Bra008573.1-P | Field mustard | extracellular, plasma membrane | 68.7 | 69.23 |
| CDX69398 | Canola | extracellular, plasma membrane | 67.94 | 68.46 |
| EES07301 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 67.94 | 67.42 |
| Zm00001d017956_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 67.18 | 66.67 |
| Zm00001d051803_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 67.18 | 66.67 |
| Os02t0734900-01 | Rice | plastid | 67.18 | 66.67 |
| GSMUA_Achr5P24620_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 62.6 | 66.67 |
| TraesCS6A01G297400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 66.41 | 65.91 |
| TraesCS6B01G327100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 66.41 | 65.91 |
| TraesCS6D01G277300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 66.41 | 65.91 |
| GSMUA_Achr7P12460_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 65.65 | 65.65 |
| Bra032012.1-P | Field mustard | plastid | 72.52 | 53.07 |
| HORVU6Hr1G073910.1 | Barley | cytosol, plastid | 66.41 | 44.16 |
| Solyc06g072440.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 42.75 | 43.41 |
| Bra023599.1-P | Field mustard | plasma membrane | 74.81 | 41.18 |
| Solyc03g097970.2.1 | Tomato | nucleus | 40.46 | 41.09 |
| CDX85472 | Canola | plasma membrane | 74.81 | 35.9 |
Protein Annotations
| MapMan:35.2 | InterPro:BAP29/BAP31 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0070973 | UniProt:K4BNU9 | PANTHER:PTHR12701 |
| PANTHER:PTHR12701:SF12 | EnsemblPlantsGene:Solyc04g007920.1 | EnsemblPlants:Solyc04g007920.1.1 | TMHMM:TMhelix | UniParc:UPI0002766D78 | SEG:seg |
Description
No Description!
Coordinates
chr4:-:1584393..1584788
Molecular Weight (calculated)
15068.9 Da
IEP (calculated)
9.887
GRAVY (calculated)
0.311
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEWVILGY AAAAEAVMVL LLTLPGTYPL RSGLLSVTRN LLKPFLSVVP FCLFLLLDIY WKYETRPKCK SAESCTPTEL MRHQKSMVKS QRNALLIASA
101: LMFYWLLYSV TRLVTRVELL NQRVEKLKNQ E
101: LMFYWLLYSV TRLVTRVELL NQRVEKLKNQ E
001: MALEWVVLGY AAAAEAIMVI LLTMPGLDAL RKGLVAVTRN LLKPFLSIIP FCLFLLMDIY WKYETRPSCD GDSCTPSEHL RHQKSIMKSQ RNALLIASAL
101: VFYWILYSVT NLVVRIEQLN QRVERLKNKD
101: VFYWILYSVT NLVVRIEQLN QRVERLKNKD
Arabidopsis Description
B-cell receptor-associated-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ0]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.