Factsheet for Solyc04g014490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17190.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060734	Potato	endoplasmic reticulum, extracellular, vacuole	97.71	97.71
Solyc11g011010.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	94.66	95.38
AT5G17190.1	Thale cress	endoplasmic reticulum, extracellular	83.21	83.85
CDY02730	Canola	endoplasmic reticulum, extracellular, vacuole	82.44	83.08
Bra001074.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	80.92	81.54
CDY43146	Canola	endoplasmic reticulum, extracellular, vacuole	80.92	81.54
KRH60355	Soybean	nucleus	80.15	80.77
KRH41659	Soybean	nucleus	80.15	80.77
CDX74224	Canola	endoplasmic reticulum, extracellular, vacuole	80.15	80.77
AT3G03160.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	80.15	80.77
CDY28742	Canola	endoplasmic reticulum, extracellular, vacuole	80.15	80.77
CDX92034	Canola	endoplasmic reticulum, extracellular, plasma membrane	79.39	80.0
GSMUA_Achr6P04330_001	Banana	endoplasmic reticulum, extracellular, vacuole	77.86	78.46
Solyc04g007920.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	77.86	77.86
EES07301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	75.57	75.0
Zm00001d017956_P001	Maize	endoplasmic reticulum, extracellular, vacuole	74.81	74.24
TraesCS6D01G277300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	74.81	74.24
TraesCS6B01G327100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	74.81	74.24
Os02t0734900-01	Rice	plastid	74.81	74.24
TraesCS6A01G297400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	74.81	74.24
GSMUA_Achr5P24620_001	Banana	endoplasmic reticulum, extracellular, vacuole	68.7	73.17
Bra008573.1-P	Field mustard	extracellular, plasma membrane	72.52	73.08
CDX69398	Canola	extracellular, plasma membrane	71.76	72.31
Zm00001d051803_P001	Maize	endoplasmic reticulum, extracellular, vacuole	71.76	71.21
GSMUA_Achr7P12460_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	69.47	69.47
Bra032012.1-P	Field mustard	plastid	80.92	59.22
HORVU6Hr1G073910.1	Barley	cytosol, plastid	74.81	49.75
Bra023599.1-P	Field mustard	plasma membrane	82.44	45.38
CDX85472	Canola	plasma membrane	82.44	39.56
Solyc06g072440.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	38.17	38.76
Solyc03g097970.2.1	Tomato	nucleus	36.64	37.21

Protein Annotations

MapMan:35.2	InterPro:BAP29/BAP31	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0070973	UniProt:K4BPV3	PANTHER:PTHR12701
PANTHER:PTHR12701:SF12	EnsemblPlantsGene:Solyc04g014490.1	EnsemblPlants:Solyc04g014490.1.1	TMHMM:TMhelix	UniParc:UPI0002766606	SEG:seg

Description

No Description!

Coordinates

chr4:+:4725303..4725698

Molecular Weight (calculated)

14894.6 Da

IEP (calculated)

9.139

GRAVY (calculated)

0.360

Length

131 amino acids

Sequence
(BLAST)

001: MALEWVVLGY AAGAEAIMLL LLTIPGLDPL RKGLIAVTRN LLKPFLSIVP FCLFLLMDIY WKYETRPTCE SSESCSPSEY LRHQKSIMKS QRNALLIASA
101: LVFYWLLYSV TGLVVKVEQL NKRVEKLKAQ D

Best Arabidopsis Sequence Match ( AT5G17190.1 )
(BLAST)

001: MALEWVVLGY AAAAEAIMVI LLTMPGLDAL RKGLVAVTRN LLKPFLSIIP FCLFLLMDIY WKYETRPSCD GDSCTPSEHL RHQKSIMKSQ RNALLIASAL
101: VFYWILYSVT NLVVRIEQLN QRVERLKNKD

Arabidopsis Description

B-cell receptor-associated-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ0]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.