Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95276 | Canola | cytosol | 87.35 | 93.55 |
| CDY41704 | Canola | cytosol | 86.75 | 92.9 |
| CDY48399 | Canola | cytosol | 92.17 | 92.17 |
| Bra027928.1-P | Field mustard | cytosol | 85.54 | 91.61 |
| Bra038157.1-P | Field mustard | cytosol | 91.57 | 91.57 |
| CDY04373 | Canola | cytosol | 78.31 | 90.28 |
| CDY57268 | Canola | cytosol | 77.11 | 88.89 |
| Bra038924.1-P | Field mustard | cytosol | 76.51 | 88.19 |
| AT1G09310.1 | Thale cress | cytosol | 77.11 | 71.51 |
| KRH68428 | Soybean | cytosol | 55.42 | 55.76 |
| AT5G46230.1 | Thale cress | cytosol | 37.35 | 43.36 |
| AT4G24130.1 | Thale cress | cytosol | 36.75 | 38.85 |
| AT5G49600.1 | Thale cress | cytosol | 37.35 | 36.26 |
| AT1G30020.1 | Thale cress | cytosol | 30.12 | 31.85 |
Protein Annotations
| Gene3D:2.30.240.10 | MapMan:35.2 | EntrezGene:837452 | EntrezGene:842112 | UniProt:A0A178WAJ6 | ProteinID:AAD18096.1 |
| ProteinID:AAG09105.1 | ProteinID:AEE28428.1 | ProteinID:AEE33411.1 | EMBL:AF348589 | ArrayExpress:AT1G56580 | EnsemblPlantsGene:AT1G56580 |
| RefSeq:AT1G56580 | TAIR:AT1G56580 | RefSeq:AT1G56580-TAIR-G | EnsemblPlants:AT1G56580.1 | TAIR:AT1G56580.1 | EMBL:AY045914 |
| EMBL:AY058110 | EMBL:AY079406 | EMBL:AY084527 | EMBL:AY101534 | InterPro:At5g01610-like | InterPro:DUF538 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010090 |
| GO:GO:0016043 | GO:GO:0030154 | GO:GO:0048046 | InterPro:IPR036758 | RefSeq:NP_563841.1 | RefSeq:NP_564720.1 |
| ProteinID:OAP14687.1 | ProteinID:OAP15388.1 | PFAM:PF04398 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR31676 | PANTHER:PTHR31676:SF10 | UniProt:Q9FXB0 | SUPFAM:SSF141562 | Symbol:SVB | UniParc:UPI00000A3702 |
Description
SVBAt1g56580/F25P12_18 [Source:UniProtKB/TrEMBL;Acc:Q9FXB0]
Coordinates
chr1:-:21198004..21199126
Molecular Weight (calculated)
18407.3 Da
IEP (calculated)
7.360
GRAVY (calculated)
-0.267
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVTDEVRA RAEKYTGDEI CREKTKEFLK EVSMPNGLLP LKDIEEVGYD RETGIVWLKQ KKSITHKFEA IGKLVSYATE VIAQVEVGKI KKLTGVKAKE
101: LLIWVTLNEL VLEQPTSSGK INFRTPTGLS RTFPVSAFVV PEVEKPATEK NNGTTEVKEA VAVTDA
101: LLIWVTLNEL VLEQPTSSGK INFRTPTGLS RTFPVSAFVV PEVEKPATEK NNGTTEVKEA VAVTDA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.