Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57268 | Canola | cytosol | 94.44 | 94.44 |
| CDX95276 | Canola | cytosol | 93.75 | 87.1 |
| CDY41704 | Canola | cytosol | 93.06 | 86.45 |
| CDY48399 | Canola | cytosol | 91.67 | 79.52 |
| AT1G56580.1 | Thale cress | cytosol | 90.28 | 78.31 |
| CDX93512 | Canola | cytosol | 74.31 | 75.89 |
| CDY31099 | Canola | cytosol | 77.78 | 66.27 |
| CDY32168 | Canola | cytosol | 75.69 | 64.88 |
| KRH68428 | Soybean | cytosol | 59.03 | 51.52 |
| CDY43960 | Canola | cytosol | 44.44 | 45.39 |
| CDX87732 | Canola | cytosol | 44.44 | 44.76 |
| CDY35265 | Canola | cytosol | 43.06 | 44.29 |
| CDX90222 | Canola | cytosol | 29.86 | 43.88 |
| CDY33463 | Canola | cytosol | 43.06 | 43.06 |
| CDY62357 | Canola | cytosol | 43.06 | 43.06 |
| CDY35153 | Canola | cytosol | 42.36 | 42.36 |
| CDY10988 | Canola | cytosol | 41.67 | 38.22 |
| CDX92616 | Canola | cytosol | 41.67 | 38.22 |
| CDY05614 | Canola | cytosol | 43.06 | 37.13 |
| CDY33893 | Canola | cytosol | 42.36 | 36.31 |
| CDY34258 | Canola | cytosol | 38.89 | 35.67 |
| CDX86223 | Canola | cytosol | 41.67 | 35.09 |
| CDY03486 | Canola | cytosol | 38.19 | 35.03 |
| CDX85421 | Canola | cytosol | 40.97 | 34.71 |
| CDY03234 | Canola | plastid | 42.36 | 34.66 |
Protein Annotations
| EnsemblPlants:CDY04373 | EnsemblPlantsGene:GSBRNA2T00118316001 | Gene3D:2.30.240.10 | InterPro:At5g01610-like | InterPro:DUF538 | InterPro:IPR036758 |
| PANTHER:PTHR31676 | PANTHER:PTHR31676:SF10 | PFAM:PF04398 | ProteinID:CDY04373 | ProteinID:CDY04373.1 | SUPFAM:SSF141562 |
| UniParc:UPI0004EE5157 | MapMan:35.2 | : | : | : | : |
Description
BnaC04g18200D
Coordinates
chrLK031952:+:743154..743588
Molecular Weight (calculated)
16123.8 Da
IEP (calculated)
8.442
GRAVY (calculated)
-0.188
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVTDEVRA RAEKYTGDEL CRQKTKEVLK EIDMPNGLLP LKDIEEVGYD RETGVMWLKQ KKSITHKFEA IGKLVSYGTE VTAVVEVGKI KKLTGVKAKE
101: LLIWVTLNEL ALEQPTSSGK INFRTLTGLS RTFPISAFVV PEIE
101: LLIWVTLNEL ALEQPTSSGK INFRTLTGLS RTFPISAFVV PEIE
001: MGLVTDEVRA RAEKYTGDEI CREKTKEFLK EVSMPNGLLP LKDIEEVGYD RETGIVWLKQ KKSITHKFEA IGKLVSYATE VIAQVEVGKI KKLTGVKAKE
101: LLIWVTLNEL VLEQPTSSGK INFRTPTGLS RTFPVSAFVV PEVEKPATEK NNGTTEVKEA VAVTDA
101: LLIWVTLNEL VLEQPTSSGK INFRTPTGLS RTFPVSAFVV PEVEKPATEK NNGTTEVKEA VAVTDA
Arabidopsis Description
SVBAt1g56580/F25P12_18 [Source:UniProtKB/TrEMBL;Acc:Q9FXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.