CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013765.1-P	Field mustard	cytosol	98.09	98.09
CDY34258	Canola	cytosol	97.45	97.45
CDX92616	Canola	cytosol	91.08	91.08
CDY10988	Canola	cytosol	90.45	90.45
AT4G24130.1	Thale cress	cytosol	87.9	87.9
Solyc08g083090.1.1	Tomato	cytosol	64.97	66.23
VIT_02s0025g02540.t01	Wine grape	cytosol	64.97	65.81
KRH12720	Soybean	cytosol	64.33	63.12
PGSC0003DMT400031909	Potato	cytosol	61.78	62.58
GSMUA_Achr4P30400_001	Banana	cytosol	54.78	54.43
PGSC0003DMT400015025	Potato	cytosol	32.48	49.51
HORVU1Hr1G047930.1	Barley	plastid	51.59	49.39
PGSC0003DMT400015026	Potato	cytosol	48.41	49.03
TraesCS1A01G181100.1	Wheat	mitochondrion	50.96	48.78
TraesCS1D01G184600.1	Wheat	plastid	51.59	48.21
TraesCS1B01G199500.1	Wheat	cytosol	50.96	47.34
Zm00001d032443_P001	Maize	extracellular	49.68	42.39
EER91364	Sorghum	cytosol	50.32	41.15
CDY62357	Canola	cytosol	37.58	40.97
CDY33463	Canola	cytosol	37.58	40.97
CDY57268	Canola	cytosol	36.94	40.28
CDX87732	Canola	cytosol	35.67	39.16
CDX93512	Canola	cytosol	35.03	39.01
CDY35153	Canola	cytosol	35.03	38.19
CDY04373	Canola	cytosol	35.03	38.19
CDY43960	Canola	cytosol	33.76	37.59
CDX95276	Canola	cytosol	36.94	37.42
CDY41704	Canola	cytosol	36.31	36.77
CDY48399	Canola	cytosol	36.31	34.34
CDY35265	Canola	cytosol	30.57	34.29
CDX90222	Canola	cytosol	21.02	33.67
CDY31099	Canola	cytosol	35.67	33.14
CDY32168	Canola	cytosol	35.03	32.74
CDY03234	Canola	plastid	35.03	31.25
CDY05614	Canola	cytosol	30.57	28.74
CDX86223	Canola	cytosol	31.21	28.66
CDX85421	Canola	cytosol	30.57	28.24
CDY33893	Canola	cytosol	29.94	27.98

Protein Annotations

EnsemblPlants:CDY03486	EnsemblPlantsGene:GSBRNA2T00116153001	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758
PANTHER:PTHR31676	PANTHER:PTHR31676:SF66	PFAM:PF04398	ProteinID:CDY03486	ProteinID:CDY03486.1	SEG:seg
SUPFAM:SSF141562	UniParc:UPI0004EBE3FF	MapMan:35.2	:	:	:

Description

BnaC01g15960D

Coordinates

chrLK031943:-:723166..723973

Molecular Weight (calculated)

18089.0 Da

IEP (calculated)

7.286

GRAVY (calculated)

-0.447

Length

157 amino acids

Sequence
(BLAST)

001: MASEEVVVVE GERAGATIVY GADECYKKSV ELLEELGFPK GVMPLKNLVE CGRVRDTGYV WMKQNTPYEH FFEGTNTRVS YGLEVTAYID KCCMKKMTGV
101: KSKQMFMWVP IAEMTMEEPK SKKIYFKTPM GIGKSYHVTA FMDEEEKRNF YLENPKK

Best Arabidopsis Sequence Match ( AT4G24130.1 )
(BLAST)

001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN

Arabidopsis Description

T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.