CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013765.1-P	Field mustard	cytosol	99.36	99.36
CDY03486	Canola	cytosol	97.45	97.45
CDX92616	Canola	cytosol	92.36	92.36
CDY10988	Canola	cytosol	91.72	91.72
AT4G24130.1	Thale cress	cytosol	89.17	89.17
VIT_02s0025g02540.t01	Wine grape	cytosol	66.24	67.1
Solyc08g083090.1.1	Tomato	cytosol	65.61	66.88
KRH12720	Soybean	cytosol	65.61	64.38
PGSC0003DMT400031909	Potato	cytosol	63.06	63.87
GSMUA_Achr4P30400_001	Banana	cytosol	56.69	56.33
HORVU1Hr1G047930.1	Barley	plastid	52.87	50.61
PGSC0003DMT400015025	Potato	cytosol	33.12	50.49
PGSC0003DMT400015026	Potato	cytosol	49.68	50.32
TraesCS1A01G181100.1	Wheat	mitochondrion	52.23	50.0
TraesCS1D01G184600.1	Wheat	plastid	52.87	49.4
TraesCS1B01G199500.1	Wheat	cytosol	52.23	48.52
Zm00001d032443_P001	Maize	extracellular	50.96	43.48
EER91364	Sorghum	cytosol	51.59	42.19
CDY62357	Canola	cytosol	38.22	41.67
CDY33463	Canola	cytosol	38.22	41.67
CDY57268	Canola	cytosol	37.58	40.97
CDX87732	Canola	cytosol	36.31	39.86
CDX93512	Canola	cytosol	35.67	39.72
CDY04373	Canola	cytosol	35.67	38.89
CDY43960	Canola	cytosol	34.39	38.3
CDY35153	Canola	cytosol	35.03	38.19
CDX95276	Canola	cytosol	37.58	38.06
CDY41704	Canola	cytosol	36.94	37.42
CDY48399	Canola	cytosol	36.94	34.94
CDY35265	Canola	cytosol	30.57	34.29
CDY31099	Canola	cytosol	36.31	33.73
CDX90222	Canola	cytosol	21.02	33.67
CDY32168	Canola	cytosol	35.67	33.33
CDY03234	Canola	plastid	35.03	31.25
CDY05614	Canola	cytosol	29.94	28.14
CDX86223	Canola	cytosol	30.57	28.07
CDX85421	Canola	cytosol	29.94	27.65
CDY33893	Canola	cytosol	29.3	27.38

Protein Annotations

EnsemblPlants:CDY34258	EnsemblPlantsGene:GSBRNA2T00056284001	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758
PANTHER:PTHR31676	PANTHER:PTHR31676:SF66	PFAM:PF04398	ProteinID:CDY34258	ProteinID:CDY34258.1	SEG:seg
SUPFAM:SSF141562	UniParc:UPI0004EF1B9B	UniProt:A0A078HBU4	MapMan:35.2	:	:

Description

BnaA01g13610DBnaA01g13610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBU4]

Coordinates

chrLK032332:+:954..1800

Molecular Weight (calculated)

18058.0 Da

IEP (calculated)

7.914

GRAVY (calculated)

-0.432

Length

157 amino acids

Sequence
(BLAST)

001: MASEEVVVVE GERAGATIVY GAEECYKKSV ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQNNPYEH FFEGTNTRVS YGLEVTAYID KCCMKKMTGV
101: KSKQMFMWVP IAEMSMEEPK SKKIYFKTPM GIGKSYHVTA FMDEEEKRNF YLENPKK

Best Arabidopsis Sequence Match ( AT4G24130.1 )
(BLAST)

001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN

Arabidopsis Description

T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.