CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
peroxisome 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032443_P001	Maize	extracellular	84.38	88.04
TraesCS1A01G181100.1	Wheat	mitochondrion	69.27	81.1
HORVU1Hr1G047930.1	Barley	plastid	68.75	80.49
TraesCS1D01G184600.1	Wheat	plastid	69.79	79.76
TraesCS1B01G199500.1	Wheat	cytosol	69.79	79.29
GSMUA_Achr4P30400_001	Banana	cytosol	51.04	62.03
Solyc08g083090.1.1	Tomato	cytosol	47.92	59.74
PGSC0003DMT400031909	Potato	cytosol	47.92	59.35
VIT_02s0025g02540.t01	Wine grape	cytosol	46.88	58.06
KRH50651	Soybean	cytosol	45.83	56.05
KRH02460	Soybean	cytosol	45.83	56.05
AT4G24130.1	Thale cress	cytosol	45.31	55.41
KRH12720	Soybean	cytosol	45.31	54.38
CDY10988	Canola	cytosol	44.27	54.14
CDX92616	Canola	cytosol	44.27	54.14
Bra019245.1-P	Field mustard	cytosol	44.27	54.14
Bra013765.1-P	Field mustard	cytosol	42.19	51.59
CDY34258	Canola	cytosol	42.19	51.59
CDY03486	Canola	cytosol	41.15	50.32
PGSC0003DMT400015025	Potato	cytosol	25.0	46.6
PGSC0003DMT400015026	Potato	cytosol	36.98	45.81
EER88235	Sorghum	cytosol	32.29	43.36
KXG19794	Sorghum	cytosol	31.77	42.66
KXG19795	Sorghum	cytosol	31.77	42.66
EER89876	Sorghum	cytosol	33.85	42.21
EES00076	Sorghum	cytosol	37.5	42.11
EER88241	Sorghum	cytosol	31.25	41.96
KXG19796	Sorghum	cytosol	30.73	41.26
EER88239	Sorghum	cytosol	30.21	40.56
OQU88323	Sorghum	cytosol	29.69	40.14
EER97867	Sorghum	cytosol	29.69	40.14
EER97870	Sorghum	cytosol	29.69	39.86
EES12041	Sorghum	cytosol	29.69	39.58
EER88238	Sorghum	cytosol	28.12	39.42
KXG19797	Sorghum	cytosol	17.71	39.08
EER96122	Sorghum	nucleus	28.65	38.46
EER95773	Sorghum	cytosol	28.65	38.19
EES11575	Sorghum	cytosol	22.4	38.05
EER96121	Sorghum	nucleus	28.12	37.76
EES01186	Sorghum	cytosol	26.56	37.5
EER97866	Sorghum	cytosol	27.6	37.32
EES19980	Sorghum	cytosol	26.04	36.5
EES08981	Sorghum	cytosol	30.73	35.12
OQU88325	Sorghum	cytosol	27.08	32.5
EER95774	Sorghum	cytosol	22.4	30.07
EER97868	Sorghum	extracellular	14.06	25.96
EES16171	Sorghum	cytosol	32.81	25.71

Protein Annotations

EnsemblPlants:EER91364	EnsemblPlantsGene:SORBI_3001G193400	EntrezGene:8065156	Gene3D:2.30.240.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758	PANTHER:PTHR31676
PANTHER:PTHR31676:SF20	PFAM:PF04398	ProteinID:EER91364	ProteinID:EER91364.1	RefSeq:XP_002464366.1	SEG:seg
SUPFAM:SSF141562	unigene:Sbi.10861	UniParc:UPI0001A823BA	UniProt:C5WVD2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:17220585..17221523

Molecular Weight (calculated)

21225.9 Da

IEP (calculated)

5.067

GRAVY (calculated)

-0.745

Length

192 amino acids

Sequence
(BLAST)

001: MASLTVSTAT AAAAGGNKSK EQQREGAEII TGAEACFAHS KEMLKSLGFP GGVMPLRGLE ECGWVRETGF VWMRQKAPYE HYFRGTGTRV RYDAEVTAYV
101: EEGRMKRMTG VRSKQVMLWV PIVEMSLDGD KRDKIYFKSN VGIGRSFPAS AFPDEDEEAA EPKKKKEEEK KEEEENAGDD DKSAADDAAA NK

Best Arabidopsis Sequence Match ( AT4G24130.1 )
(BLAST)

001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN

Arabidopsis Description

T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.