Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- peroxisome 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015026 | Potato | cytosol | 75.73 | 50.32 |
| PGSC0003DMT400031909 | Potato | cytosol | 63.11 | 41.94 |
| VIT_02s0025g02540.t01 | Wine grape | cytosol | 56.31 | 37.42 |
| KRH50651 | Soybean | cytosol | 56.31 | 36.94 |
| KRH02460 | Soybean | cytosol | 56.31 | 36.94 |
| Bra019245.1-P | Field mustard | cytosol | 55.34 | 36.31 |
| CDX92616 | Canola | cytosol | 55.34 | 36.31 |
| CDY10988 | Canola | cytosol | 55.34 | 36.31 |
| AT4G24130.1 | Thale cress | cytosol | 52.43 | 34.39 |
| Bra013765.1-P | Field mustard | cytosol | 50.49 | 33.12 |
| CDY34258 | Canola | cytosol | 50.49 | 33.12 |
| GSMUA_Achr4P30400_001 | Banana | cytosol | 50.49 | 32.91 |
| CDY03486 | Canola | cytosol | 49.51 | 32.48 |
| HORVU1Hr1G047930.1 | Barley | plastid | 43.69 | 27.44 |
| TraesCS1A01G181100.1 | Wheat | mitochondrion | 43.69 | 27.44 |
| TraesCS1D01G184600.1 | Wheat | plastid | 44.66 | 27.38 |
| TraesCS1B01G199500.1 | Wheat | cytosol | 44.66 | 27.22 |
| Zm00001d032443_P001 | Maize | extracellular | 47.57 | 26.63 |
| PGSC0003DMT400024987 | Potato | cytosol | 35.92 | 26.43 |
| PGSC0003DMT400090071 | Potato | cytosol | 33.98 | 25.74 |
| PGSC0003DMT400011191 | Potato | cytosol | 33.98 | 25.74 |
| PGSC0003DMT400026444 | Potato | cytosol | 33.01 | 25.0 |
| PGSC0003DMT400026439 | Potato | cytosol | 33.01 | 25.0 |
| EER91364 | Sorghum | cytosol | 46.6 | 25.0 |
| PGSC0003DMT400054524 | Potato | cytosol | 33.98 | 23.97 |
| PGSC0003DMT400026443 | Potato | cytosol | 30.1 | 22.79 |
| PGSC0003DMT400007217 | Potato | cytosol | 36.89 | 22.75 |
| PGSC0003DMT400007216 | Potato | cytosol | 37.86 | 22.29 |
| PGSC0003DMT400026441 | Potato | cytosol | 28.16 | 21.32 |
| PGSC0003DMT400026442 | Potato | cytosol | 28.16 | 21.32 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015025 | EnsemblPlantsGene:PGSC0003DMG400005864 | Gene3D:2.30.240.10 | InterPro:At5g01610-like | InterPro:DUF538 | InterPro:IPR036758 |
| PANTHER:PTHR31676 | PANTHER:PTHR31676:SF20 | PFAM:PF04398 | PGSC:PGSC0003DMG400005864 | SUPFAM:SSF141562 | UniParc:UPI000294F971 |
| UniProt:M1A5A5 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005864]
Coordinates
chr8:-:5618825..5620223
Molecular Weight (calculated)
12026.5 Da
IEP (calculated)
8.635
GRAVY (calculated)
-0.606
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDMQKSIH EDEHVEAEIV YGAEECYRSI TNLLQDSGFP KGVLPLKYLE EFGYVRKTGF AWMKQKAPYD HYFTSIKMLV SYATEITAYV EKGKMKKNKR
101: CQR
101: CQR
001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN
Arabidopsis Description
T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.