CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10988	Canola	cytosol	99.36	99.36
CDY34258	Canola	cytosol	92.36	92.36
CDY03486	Canola	cytosol	91.08	91.08
AT4G24130.1	Thale cress	cytosol	91.08	91.08
Solyc08g083090.1.1	Tomato	cytosol	70.06	71.43
PGSC0003DMT400031909	Potato	cytosol	67.52	68.39
VIT_02s0025g02540.t01	Wine grape	cytosol	66.88	67.74
KRH12720	Soybean	cytosol	68.15	66.88
GSMUA_Achr4P30400_001	Banana	cytosol	57.96	57.59
PGSC0003DMT400015025	Potato	cytosol	36.31	55.34
HORVU1Hr1G047930.1	Barley	plastid	55.41	53.05
TraesCS1A01G181100.1	Wheat	mitochondrion	54.78	52.44
PGSC0003DMT400015026	Potato	cytosol	51.59	52.26
TraesCS1D01G184600.1	Wheat	plastid	55.41	51.79
TraesCS1B01G199500.1	Wheat	cytosol	54.78	50.89
Zm00001d032443_P001	Maize	extracellular	53.5	45.65
EER91364	Sorghum	cytosol	54.14	44.27
CDY57268	Canola	cytosol	40.13	43.75
CDY33463	Canola	cytosol	39.49	43.06
CDY62357	Canola	cytosol	39.49	43.06
CDX93512	Canola	cytosol	37.58	41.84
CDY04373	Canola	cytosol	38.22	41.67
CDX87732	Canola	cytosol	37.58	41.26
CDY35153	Canola	cytosol	36.94	40.28
CDX95276	Canola	cytosol	39.49	40.0
CDY41704	Canola	cytosol	38.85	39.35
CDY43960	Canola	cytosol	35.03	39.01
CDX90222	Canola	cytosol	24.2	38.78
CDY35265	Canola	cytosol	33.76	37.86
CDY48399	Canola	cytosol	38.85	36.75
CDY31099	Canola	cytosol	38.22	35.5
CDY32168	Canola	cytosol	37.58	35.12
CDY03234	Canola	plastid	36.94	32.95
CDX86223	Canola	cytosol	32.48	29.82
CDX85421	Canola	cytosol	31.85	29.41
CDY05614	Canola	cytosol	31.21	29.34
CDY33893	Canola	cytosol	30.57	28.57

Protein Annotations

EnsemblPlants:CDX92616	EnsemblPlantsGene:GSBRNA2T00154417001	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758
PANTHER:PTHR31676	PANTHER:PTHR31676:SF66	PFAM:PF04398	ProteinID:CDX92616	ProteinID:CDX92616.1	SEG:seg
SUPFAM:SSF141562	UniParc:UPI0004EDCA58	MapMan:35.2	:	:	:

Description

BnaC07g38740D

Coordinates

chrLK031873:+:14810..15653

Molecular Weight (calculated)

17950.9 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.339

Length

157 amino acids

Sequence
(BLAST)

001: MASEEVVVVG GERAGAEIVY GAEECYKNSV ELLEELGFPK GVMPLKNLVE CGRVRATGFV WMKQNTPYEH FFEATNTRVS YALEVTAYVD KGCMKKMTGV
101: KSKQMFMWVP IVEMSMEEPK SKKIYFKTPM GLGKSFHVTA FMDEEEKRNF YLENPKK

Best Arabidopsis Sequence Match ( AT4G24130.1 )
(BLAST)

001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN

Arabidopsis Description

T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.