Factsheet for PGSC0003DMT400031909

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083090.1.1	Tomato	cytosol	94.84	95.45
VIT_02s0025g02540.t01	Wine grape	cytosol	73.55	73.55
KRH50651	Soybean	cytosol	70.97	70.06
KRH02460	Soybean	cytosol	69.03	68.15
Bra019245.1-P	Field mustard	cytosol	68.39	67.52
CDX92616	Canola	cytosol	68.39	67.52
CDY10988	Canola	cytosol	68.39	67.52
AT4G24130.1	Thale cress	cytosol	67.1	66.24
PGSC0003DMT400015025	Potato	cytosol	41.94	63.11
Bra013765.1-P	Field mustard	cytosol	63.87	63.06
CDY34258	Canola	cytosol	63.87	63.06
PGSC0003DMT400015026	Potato	cytosol	62.58	62.58
CDY03486	Canola	cytosol	62.58	61.78
GSMUA_Achr4P30400_001	Banana	cytosol	58.06	56.96
HORVU1Hr1G047930.1	Barley	plastid	58.06	54.88
TraesCS1A01G181100.1	Wheat	mitochondrion	57.42	54.27
TraesCS1D01G184600.1	Wheat	plastid	58.71	54.17
TraesCS1B01G199500.1	Wheat	cytosol	58.06	53.25
Zm00001d032443_P001	Maize	extracellular	57.42	48.37
EER91364	Sorghum	cytosol	59.35	47.92
PGSC0003DMT400054524	Potato	cytosol	44.52	47.26
PGSC0003DMT400024987	Potato	cytosol	41.94	46.43
PGSC0003DMT400090071	Potato	cytosol	38.06	43.38
PGSC0003DMT400011191	Potato	cytosol	38.06	43.38
PGSC0003DMT400026439	Potato	cytosol	37.42	42.65
PGSC0003DMT400026444	Potato	cytosol	34.84	39.71
PGSC0003DMT400007217	Potato	cytosol	41.94	38.92
PGSC0003DMT400007216	Potato	cytosol	43.23	38.29
PGSC0003DMT400026441	Potato	cytosol	30.32	34.56
PGSC0003DMT400026442	Potato	cytosol	30.32	34.56
PGSC0003DMT400026443	Potato	cytosol	29.68	33.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400031909	EnsemblPlantsGene:PGSC0003DMG400012241	EntrezGene:102590070	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538
InterPro:IPR036758	PANTHER:PTHR31676	PANTHER:PTHR31676:SF20	PFAM:PF04398	PGSC:PGSC0003DMG400012241	RefSeq:XP_006343785.1
SUPFAM:SSF141562	UniParc:UPI000295E829	UniProt:M1AWG7	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012241]

Coordinates

chr8:+:56602118..56602865

Molecular Weight (calculated)

17577.3 Da

IEP (calculated)

6.270

GRAVY (calculated)

-0.303

Length

155 amino acids

Sequence
(BLAST)

001: MASDKTSCQD ERAGAEIVYG VEDCYSHSLE LLKELGFPMG VLALKDLEEC GCVRETGFVW MKQKAPYEHY FVATKTLVSY ATEVTAYVEK GRMKKMTGVK
101: SKQLFLWVPI VEMSIEDPAQ NKIHFKTPIG IGKSFPLTAF MTDEEKKKYL EKANE

Best Arabidopsis Sequence Match ( AT4G24130.1 )
(BLAST)

001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN

Arabidopsis Description

T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.