Factsheet for Zm00001d032443_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91364	Sorghum	cytosol	88.04	84.38
TraesCS1A01G181100.1	Wheat	mitochondrion	72.83	81.71
HORVU1Hr1G047930.1	Barley	plastid	72.28	81.1
TraesCS1B01G199500.1	Wheat	cytosol	73.37	79.88
TraesCS1D01G184600.1	Wheat	plastid	72.83	79.76
GSMUA_Achr4P30400_001	Banana	cytosol	53.8	62.66
Solyc08g083090.1.1	Tomato	cytosol	48.91	58.44
VIT_02s0025g02540.t01	Wine grape	cytosol	48.37	57.42
PGSC0003DMT400031909	Potato	cytosol	48.37	57.42
KRH02460	Soybean	cytosol	46.74	54.78
KRH50651	Soybean	cytosol	46.74	54.78
AT4G24130.1	Thale cress	cytosol	46.74	54.78
CDY10988	Canola	cytosol	45.65	53.5
CDX92616	Canola	cytosol	45.65	53.5
Bra019245.1-P	Field mustard	cytosol	45.65	53.5
KRH12720	Soybean	cytosol	46.2	53.12
Bra013765.1-P	Field mustard	cytosol	43.48	50.96
CDY34258	Canola	cytosol	43.48	50.96
CDY03486	Canola	cytosol	42.39	49.68
PGSC0003DMT400015025	Potato	cytosol	26.63	47.57
PGSC0003DMT400015026	Potato	cytosol	39.67	47.1
Zm00001d008910_P001	Maize	cytosol	28.8	42.06
Zm00001d002015_P001	Maize	cytosol	32.61	41.96
Zm00001d002017_P001	Maize	cytosol	32.61	41.96
Zm00001d018682_P001	Maize	cytosol	32.61	41.96
Zm00001d018683_P001	Maize	cytosol	32.61	41.96
Zm00001d002014_P001	Maize	cytosol	32.61	41.67
Zm00001d002016_P001	Maize	cytosol	32.07	40.97
Zm00001d044034_P001	Maize	cytosol	29.89	40.44
Zm00001d037018_P001	Maize	cytosol, extracellular, mitochondrion, plastid	34.78	39.75
Zm00001d039083_P001	Maize	cytosol	28.26	37.68
Zm00001d030642_P001	Maize	mitochondrion	23.91	36.97
Zm00001d052772_P001	Maize	cytosol	33.7	36.47
Zm00001d048649_P001	Maize	cytosol	34.78	34.22
Zm00001d041578_P001	Maize	cytosol, mitochondrion	36.41	29.91
Zm00001d002018_P001	Maize	cytosol	32.07	25.11

Protein Annotations

EnsemblPlants:Zm00001d032443_P001	EnsemblPlants:Zm00001d032443_T001	EnsemblPlantsGene:Zm00001d032443	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538
InterPro:IPR036758	ncoils:Coil	PANTHER:PTHR31676	PANTHER:PTHR31676:SF20	PFAM:PF04398	ProteinID:ONM05089.1
SEG:seg	SUPFAM:SSF141562	UniParc:UPI000842DB4C	UniProt:A0A1D6KQQ6	MapMan:35.2	:

Description

DUF538 family protein

Coordinates

chr1:+:226591503..226592057

Molecular Weight (calculated)

20278.0 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.660

Length

184 amino acids

Sequence
(BLAST)

001: MASLTVSTKT AAAGGNKQRE GAEVITGAEA CFAHSKQMLQ ALGFPGGVMP LRGLEECGWV RETGFVWMRQ KAPYEHYFRG TGTRVRYDAE VTAYVEDGRM
101: KRMTGVRSKQ VMLWVPIVEM SLDGDKRDKI YFKSNVGIGR SFPASAFADE DEQAEEEEKK KKNENKEEEN GDKPAAAAAD AAGK

Best Arabidopsis Sequence Match ( AT4G24130.1 )
(BLAST)

001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN

Arabidopsis Description

T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.