Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10988 | Canola | cytosol | 91.72 | 91.72 |
| Bra019245.1-P | Field mustard | cytosol | 91.72 | 91.72 |
| CDX92616 | Canola | cytosol | 91.08 | 91.08 |
| Bra013765.1-P | Field mustard | cytosol | 89.81 | 89.81 |
| CDY34258 | Canola | cytosol | 89.17 | 89.17 |
| CDY03486 | Canola | cytosol | 87.9 | 87.9 |
| Solyc08g083090.1.1 | Tomato | cytosol | 67.52 | 68.83 |
| PGSC0003DMT400031909 | Potato | cytosol | 66.24 | 67.1 |
| VIT_02s0025g02540.t01 | Wine grape | cytosol | 65.61 | 66.45 |
| KRH12720 | Soybean | cytosol | 64.97 | 63.75 |
| GSMUA_Achr4P30400_001 | Banana | cytosol | 59.24 | 58.86 |
| HORVU1Hr1G047930.1 | Barley | plastid | 57.96 | 55.49 |
| TraesCS1A01G181100.1 | Wheat | mitochondrion | 57.32 | 54.88 |
| TraesCS1D01G184600.1 | Wheat | plastid | 57.96 | 54.17 |
| TraesCS1B01G199500.1 | Wheat | cytosol | 57.32 | 53.25 |
| PGSC0003DMT400015025 | Potato | cytosol | 34.39 | 52.43 |
| PGSC0003DMT400015026 | Potato | cytosol | 50.32 | 50.97 |
| Zm00001d032443_P001 | Maize | extracellular | 54.78 | 46.74 |
| EER91364 | Sorghum | cytosol | 55.41 | 45.31 |
| AT5G46230.1 | Thale cress | cytosol | 36.31 | 39.86 |
| AT1G56580.1 | Thale cress | cytosol | 38.85 | 36.75 |
| AT1G09310.1 | Thale cress | cytosol | 38.85 | 34.08 |
| AT5G49600.1 | Thale cress | cytosol | 29.94 | 27.49 |
| AT1G30020.1 | Thale cress | cytosol | 25.48 | 25.48 |
Protein Annotations
| Gene3D:2.30.240.10 | MapMan:35.2 | EntrezGene:828513 | UniProt:A0A178V6B8 | ProteinID:AAB63612.1 | ProteinID:AEE84853.1 |
| EMBL:AK118183 | ArrayExpress:AT4G24130 | EnsemblPlantsGene:AT4G24130 | RefSeq:AT4G24130 | TAIR:AT4G24130 | RefSeq:AT4G24130-TAIR-G |
| EnsemblPlants:AT4G24130.1 | TAIR:AT4G24130.1 | InterPro:At5g01610-like | EMBL:BT008528 | ProteinID:CAB51656.1 | ProteinID:CAB81331.1 |
| InterPro:DUF538 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 |
| InterPro:IPR036758 | RefSeq:NP_194144.1 | UniProt:O22978 | ProteinID:OAP00493.1 | PFAM:PF04398 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31676 | PANTHER:PTHR31676:SF66 | SUPFAM:SSF141562 |
| UniParc:UPI00000AC2E5 | SEG:seg | : | : | : | : |
Description
T19F6.7 protein [Source:UniProtKB/TrEMBL;Acc:O22978]
Coordinates
chr4:+:12527675..12528686
Molecular Weight (calculated)
17955.8 Da
IEP (calculated)
5.394
GRAVY (calculated)
-0.366
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.