Factsheet for PGSC0003DMT400007217

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100750.2.1	Tomato	cytosol	94.61	96.93
PGSC0003DMT400007216	Potato	cytosol	91.62	87.43
VIT_14s0060g00900.t01	Wine grape	cytosol	67.07	67.47
GSMUA_Achr3P12720_001	Banana	cytosol	56.29	57.67
PGSC0003DMT400054524	Potato	cytosol	44.91	51.37
KRH02405	Soybean	cytosol	49.7	50.61
KRH50684	Soybean	cytosol	49.1	50.0
PGSC0003DMT400024987	Potato	cytosol	41.92	50.0
Zm00001d030642_P001	Maize	mitochondrion	33.53	47.06
PGSC0003DMT400011191	Potato	cytosol	38.32	47.06
PGSC0003DMT400090071	Potato	cytosol	38.32	47.06
TraesCS5A01G086600.1	Wheat	cytosol	49.7	46.63
PGSC0003DMT400026439	Potato	cytosol	37.72	46.32
CDY05614	Canola	cytosol	44.31	44.31
Os11t0683600-00	Rice	cytosol	44.31	44.05
Os12t0563600-03	Rice	cytosol, plasma membrane	53.29	43.84
CDY33893	Canola	cytosol	43.71	43.45
TraesCS4D01G143300.1	Wheat	cytosol	43.71	43.45
Bra020626.1-P	Field mustard	cytosol	44.31	43.27
AT5G49600.1	Thale cress	cytosol	44.31	43.27
TraesCSU01G068000.1	Wheat	cytosol	43.11	42.86
Bra010024.1-P	Field mustard	cytosol	43.71	42.69
CDX86223	Canola	cytosol	43.71	42.69
CDX85421	Canola	cytosol	43.11	42.35
PGSC0003DMT400031909	Potato	cytosol	38.92	41.94
PGSC0003DMT400026444	Potato	cytosol	34.13	41.91
Zm00001d052772_P001	Maize	cytosol	42.52	41.76
EES08981	Sorghum	cytosol	41.32	41.07
TraesCS5B01G092500.1	Wheat	cytosol	50.3	39.25
Zm00001d041578_P001	Maize	cytosol, mitochondrion	52.1	38.84
TraesCS5D01G100100.1	Wheat	cytosol	50.9	38.64
PGSC0003DMT400015025	Potato	cytosol	22.75	36.89
PGSC0003DMT400026443	Potato	cytosol	29.94	36.76
EES16171	Sorghum	cytosol	53.89	36.73
PGSC0003DMT400026441	Potato	cytosol	29.34	36.03
PGSC0003DMT400026442	Potato	cytosol	29.34	36.03
PGSC0003DMT400015026	Potato	cytosol	32.93	35.48
Zm00001d048649_P001	Maize	cytosol	39.52	35.29
TraesCS4A01G171900.1	Wheat	mitochondrion	42.52	32.57
HORVU5Hr1G022550.1	Barley	plastid	50.9	31.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400007217	EnsemblPlantsGene:PGSC0003DMG400002791	EntrezGene:102587682	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538
InterPro:IPR036758	PANTHER:PTHR31676	PANTHER:PTHR31676:SF10	PFAM:PF04398	PGSC:PGSC0003DMG400002791	RefSeq:XP_006344787.1
SEG:seg	SUPFAM:SSF141562	UniParc:UPI000294E3DD	UniProt:M0ZSN8	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002791]

Coordinates

chr1:+:78404822..78405571

Molecular Weight (calculated)

18653.7 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.208

Length

167 amino acids

Sequence
(BLAST)

001: MSLVTEEIRA SATEFYTGND ICQEKSKLLL TEVGLPNGLL PMQDMLECGY VKDTGFVWLK SKKKTEHKFE KIGKSVQYAA EVTAYVEPNK IKKLTGVKAK
101: ELLMWLTLNE ICVDEPSTGK IHFKTPTGLS RTFPVAAFEL NEPKKEVKEE VKEVSAVVVA AVEVKEV

Best Arabidopsis Sequence Match ( AT1G56580.1 )
(BLAST)

001: MGLVTDEVRA RAEKYTGDEI CREKTKEFLK EVSMPNGLLP LKDIEEVGYD RETGIVWLKQ KKSITHKFEA IGKLVSYATE VIAQVEVGKI KKLTGVKAKE
101: LLIWVTLNEL VLEQPTSSGK INFRTPTGLS RTFPVSAFVV PEVEKPATEK NNGTTEVKEA VAVTDA

Arabidopsis Description

SVBAt1g56580/F25P12_18 [Source:UniProtKB/TrEMBL;Acc:Q9FXB0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.