Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G086600.1 | Wheat | cytosol | 63.05 | 71.91 |
| Zm00001d030642_P001 | Maize | mitochondrion | 40.89 | 69.75 |
| Zm00001d041578_P001 | Maize | cytosol, mitochondrion | 75.37 | 68.3 |
| TraesCS5D01G100100.1 | Wheat | cytosol | 69.95 | 64.55 |
| TraesCS5B01G092500.1 | Wheat | cytosol | 67.98 | 64.49 |
| EES16171 | Sorghum | cytosol | 76.35 | 63.27 |
| GSMUA_Achr3P12720_001 | Banana | cytosol | 45.81 | 57.06 |
| PGSC0003DMT400007217 | Potato | cytosol | 43.84 | 53.29 |
| Os11t0683600-00 | Rice | cytosol | 43.84 | 52.98 |
| Solyc01g100750.2.1 | Tomato | cytosol | 42.36 | 52.76 |
| HORVU5Hr1G022550.1 | Barley | plastid | 68.97 | 52.63 |
| VIT_14s0060g00900.t01 | Wine grape | cytosol | 42.36 | 51.81 |
| Solyc01g100760.2.1 | Tomato | cytosol | 40.89 | 50.61 |
| KRH33794 | Soybean | cytosol | 43.84 | 50.0 |
| Os07t0120650-01 | Rice | cytosol | 34.98 | 50.0 |
| Solyc01g100770.2.1 | Tomato | cytosol | 39.9 | 49.39 |
| Os07t0119800-00 | Rice | cytosol | 33.99 | 48.25 |
| PGSC0003DMT400007216 | Potato | cytosol | 41.38 | 48.0 |
| Os07t0120100-01 | Rice | cytosol | 33.5 | 47.89 |
| Os07t0120500-00 | Rice | cytosol | 33.5 | 47.89 |
| Os07t0118200-00 | Rice | cytosol | 33.0 | 47.18 |
| Os07t0120300-00 | Rice | cytosol | 33.0 | 47.18 |
| Os11t0594700-00 | Rice | nucleus | 32.51 | 46.48 |
| Os11t0594800-01 | Rice | cytosol | 32.02 | 45.77 |
| Os07t0120000-00 | Rice | cytosol | 31.53 | 45.07 |
| Os07t0118250-00 | Rice | cytosol | 31.53 | 45.07 |
| Os05t0573600-00 | Rice | cytosol | 30.54 | 44.93 |
| Os01t0652700-00 | Rice | cytosol | 29.56 | 44.12 |
| KRH02405 | Soybean | cytosol | 33.5 | 41.46 |
| KRH50684 | Soybean | cytosol | 32.02 | 39.63 |
| Os01t0210600-02 | Rice | cytosol, extracellular, plasma membrane, plastid | 32.51 | 39.52 |
| AT5G49600.1 | Thale cress | cytosol | 32.02 | 38.01 |
| CDY05614 | Canola | cytosol | 30.54 | 37.13 |
| CDY33893 | Canola | cytosol | 30.54 | 36.9 |
| CDX86223 | Canola | cytosol | 31.03 | 36.84 |
| Bra010024.1-P | Field mustard | cytosol | 31.03 | 36.84 |
| CDX85421 | Canola | cytosol | 30.54 | 36.47 |
| Os06t0538900-01 | Rice | plastid | 33.99 | 36.32 |
| Bra020626.1-P | Field mustard | cytosol | 30.54 | 36.26 |
| Os11t0595000-00 | Rice | nucleus | 29.56 | 29.85 |
Protein Annotations
| EnsemblPlants:Os12t0563600-03 | EnsemblPlantsGene:Os12g0563600 | Gene3D:2.30.240.10 | InterPro:At5g01610-like | InterPro:DUF538 | InterPro:IPR036758 |
| ncoils:Coil | PANTHER:PTHR31676 | PANTHER:PTHR31676:SF10 | PFAM:PF04398 | ProteinID:ABA98963.1 | ProteinID:BAF30057.1 |
| ProteinID:BAT17669.1 | SEG:seg | SUPFAM:SSF141562 | UniParc:UPI0000680DF6 | UniProt:Q2QNJ0 | MapMan:35.2 |
Description
Protein of unknown function DUF538 family protein. (Os12t0563600-03)
Coordinates
chr12:+:23115491..23116535
Molecular Weight (calculated)
21977.3 Da
IEP (calculated)
5.056
GRAVY (calculated)
-0.387
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLTIPDDVR AKAEVYVGDE AGQEKTRLLL EETGLPSGLL PLRDIIECGY VEETGFVWLK QRRKVDHFFA KAGRHVSYAA EVSAVAEKGR LRKITGVKAK
101: ELLIWVTLHE IAVDDPPTGK LTCKAIGGLS RSFPVDAFEA PPPPPKNPSP AAGDTTKVDE EKKKEEEVAG DAAAAAIDEI EGKMKEMNSK EVQVQAEGVA
201: AKN
101: ELLIWVTLHE IAVDDPPTGK LTCKAIGGLS RSFPVDAFEA PPPPPKNPSP AAGDTTKVDE EKKKEEEVAG DAAAAAIDEI EGKMKEMNSK EVQVQAEGVA
201: AKN
001: MGLVTEEVRA KAEMYTGDEI CREKTKCFLK EISMPNGLLP LKDIEEVGYD RESGVVWLKQ KKSITHKFTE IDKLVSYGTE VTAIVETGKI KKLTGVKAKE
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.