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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plasma membrane 1
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:plasma membrane
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
TargetP:plastid
YLoc:cytosol
 extracellular: 18372294
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER89876 Sorghum cytosol 65.26 80.52
Zm00001d037018_P001 Maize cytosol, extracellular, mitochondrion, plastid 67.37 79.5
TraesCS7A01G346000.1 Wheat cytosol 65.26 78.98
TraesCS7B01G237200.1 Wheat cytosol 64.21 77.71
TraesCS7D01G333200.1 Wheat cytosol 62.63 75.8
VIT_10s0003g03300.t01 Wine grape cytosol 43.16 55.03
GSMUA_Achr10P... Banana cytosol 43.68 53.21
Os07t0120300-00 Rice cytosol 38.95 52.11
GSMUA_Achr10P... Banana cytosol 41.58 51.97
Os07t0119800-00 Rice cytosol 38.95 51.75
Os07t0118200-00 Rice cytosol 38.42 51.41
Os07t0120650-01 Rice cytosol 37.89 50.7
Os07t0120500-00 Rice cytosol 37.37 50.0
Os07t0120100-01 Rice cytosol 37.37 50.0
PGSC0003DMT400054524 Potato cytosol 38.42 50.0
GSMUA_Achr7P13960_001 Banana cytosol 41.05 49.68
Solyc02g070500.1.1 Tomato cytosol 38.42 49.66
Os01t0210600-02 Rice cytosol, extracellular, plasma membrane, plastid 43.16 49.1
Os07t0120000-00 Rice cytosol 36.32 48.59
Os07t0118250-00 Rice cytosol 35.79 47.89
PGSC0003DMT400024987 Potato cytosol 35.26 47.86
Solyc08g016580.1.1 Tomato cytosol, extracellular 35.26 47.86
KRH11189 Soybean cytosol 40.53 47.53
Os11t0594700-00 Rice nucleus 35.26 47.18
Bra022026.1-P Field mustard cytosol 34.74 46.81
CDY43960 Canola cytosol 34.74 46.81
Os11t0594800-01 Rice cytosol 34.74 46.48
Bra025029.1-P Field mustard cytosol 34.74 45.83
CDY33463 Canola cytosol 34.74 45.83
CDY62357 Canola cytosol 34.74 45.83
CDX87732 Canola cytosol 34.21 45.45
AT5G46230.1 Thale cress cytosol 33.16 44.06
CDX90222 Canola cytosol 22.63 43.88
Bra010803.1-P Field mustard cytosol 22.63 43.88
CDY35153 Canola cytosol 33.16 43.75
Bra017568.1-P Field mustard cytosol 33.16 43.75
CDY35265 Canola cytosol 32.11 43.57
Os01t0652700-00 Rice cytosol 28.95 40.44
Os05t0573600-00 Rice cytosol 28.95 39.86
Os11t0683600-00 Rice cytosol 33.16 37.5
CDY03234 Canola plastid 33.68 36.36
AT1G30020.1 Thale cress cytosol 28.95 35.03
Os12t0563600-03 Rice cytosol, plasma membrane 36.32 33.99
Os11t0595000-00 Rice nucleus 31.58 29.85
Protein Annotations
EnsemblPlants:Os06t0538900-01EnsemblPlantsGene:Os06g0538900Gene3D:2.30.240.10GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:At5g01610-likeInterPro:DUF538InterPro:IPR036758PANTHER:PTHR31676PANTHER:PTHR31676:SF24
PFAM:PF04398ProteinID:BAS98114.1SEG:segSUPFAM:SSF141562UniParc:UPI0003939A83UniProt:A0A0P0WXJ2
MapMan:35.2:::::
Description
Protein of unknown function DUF538 domain containing protein. (Os06t0538900-01)
Coordinates
chr6:-:20223916..20224692
Molecular Weight (calculated)
20184.8 Da
IEP (calculated)
5.873
GRAVY (calculated)
-0.295
Length
190 amino acids
Sequence
(BLAST)
001: SHHPSPKFPN SGPPASQETP NPTPAMASQL VEEHRSGAEV HTGHELCERK ARELLVELGL PDGLLPLPSL EEVGYNRAAG FVWLRQTQAG GATHTFDTIG
101: KQVWYAGEVT AFVEQGRMHG VAGVKSKELL IWVSISEIVL SPSGTKLVFR TPAGLGRALP VTAFQLNPAP PEPEKKDAAA ADEADAAATN
Best Arabidopsis Sequence Match ( AT1G09310.1 )
(BLAST)
001: MGLVTEEVRA KAEMYTGDEI CREKTKCFLK EISMPNGLLP LKDIEEVGYD RESGVVWLKQ KKSITHKFTE IDKLVSYGTE VTAIVETGKI KKLTGVKAKE
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.