Factsheet for VIT_10s0003g03300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054524	Potato	cytosol	66.44	67.81
Solyc02g070500.1.1	Tomato	cytosol	66.44	67.35
Solyc08g016580.1.1	Tomato	cytosol, extracellular	61.07	65.0
PGSC0003DMT400024987	Potato	cytosol	59.73	63.57
Bra022026.1-P	Field mustard	cytosol	55.7	58.87
CDY43960	Canola	cytosol	55.7	58.87
CDX87732	Canola	cytosol	56.38	58.74
TraesCSU01G243200.1	Wheat	cytosol	59.06	58.67
TraesCS3B01G586700.1	Wheat	cytosol	59.06	58.67
TraesCS3B01G594700.1	Wheat	cytosol	59.06	58.67
TraesCS3B01G554700.1	Wheat	cytosol	58.39	58.39
TraesCS3B01G554600.1	Wheat	cytosol	58.39	58.0
GSMUA_Achr10P...	Banana	cytosol	59.06	57.89
TraesCS3B01G605800.1	Wheat	cytosol	59.06	57.89
KRH11189	Soybean	cytosol	62.42	57.41
TraesCS3B01G579600.1	Wheat	cytosol	57.72	57.33
TraesCS3B01G606500.1	Wheat	cytosol	59.06	57.14
TraesCS3A01G132500.1	Wheat	cytosol	57.05	57.05
CDY33463	Canola	cytosol	55.03	56.94
CDY62357	Canola	cytosol	55.03	56.94
Bra025029.1-P	Field mustard	cytosol	55.03	56.94
TraesCS3B01G586600.1	Wheat	cytosol	44.97	56.78
AT5G46230.1	Thale cress	cytosol	54.36	56.64
GSMUA_Achr10P...	Banana	cytosol	59.06	56.41
GSMUA_Achr7P13960_001	Banana	cytosol	59.06	56.05
TraesCS3B01G053600.1	Wheat	cytosol	54.36	55.86
TraesCS3D01G148700.1	Wheat	cytosol	55.7	55.7
TraesCSU01G231600.1	Wheat	cytosol	46.98	55.56
EER89876	Sorghum	cytosol	57.05	55.19
Bra017568.1-P	Field mustard	cytosol	52.35	54.17
CDY35153	Canola	cytosol	52.35	54.17
Bra010803.1-P	Field mustard	cytosol	35.57	54.08
CDX90222	Canola	cytosol	35.57	54.08
TraesCS3A01G132600.1	Wheat	cytosol	57.05	53.46
TraesCS7A01G346000.1	Wheat	cytosol	55.7	52.87
Zm00001d037018_P001	Maize	cytosol, extracellular, mitochondrion, plastid	57.05	52.8
TraesCS7B01G237200.1	Wheat	cytosol	55.03	52.23
TraesCS7D01G333200.1	Wheat	cytosol	55.03	52.23
TraesCS3B01G167000.1	Wheat	cytosol	55.7	52.2
TraesCS3D01G148900.1	Wheat	cytosol	55.7	52.2
EES00076	Sorghum	cytosol	59.73	52.05
CDY35265	Canola	cytosol	47.65	50.71
VIT_14s0060g00900.t01	Wine grape	cytosol	55.7	50.0
Os01t0210600-02	Rice	cytosol, extracellular, plasma membrane, plastid	55.03	49.1
VIT_10s0003g01210.t01	Wine grape	cytosol	40.94	45.86
VIT_12s0028g02230.t01	Wine grape	cytosol	41.61	45.59
CDY03234	Canola	plastid	53.02	44.89
VIT_02s0025g02540.t01	Wine grape	cytosol	46.31	44.52
Os06t0538900-01	Rice	plastid	55.03	43.16
Zm00001d008910_P001	Maize	cytosol	36.24	42.86
AT1G30020.1	Thale cress	cytosol	41.61	39.49
HORVU3Hr1G028780.1	Barley	plastid	56.38	34.01

Protein Annotations

EntrezGene:100265752	wikigene:100265752	Gene3D:2.30.240.10	MapMan:35.2	InterPro:At5g01610-like	ProteinID:CBI30872
ProteinID:CBI30872.3	UniProt:D7TK50	InterPro:DUF538	EMBL:FN595992	InterPro:IPR036758	EntrezGene:LOC100265752
wikigene:LOC100265752	PFAM:PF04398	PANTHER:PTHR31676	PANTHER:PTHR31676:SF7	SUPFAM:SSF141562	TIGR:TC59721
UniParc:UPI00015CDEE8	ArrayExpress:VIT_10s0003g03300	EnsemblPlantsGene:VIT_10s0003g03300	EnsemblPlants:VIT_10s0003g03300.t01	unigene:Vvi.25216	RefSeq:XP_002275796
RefSeq:XP_002275796.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:5488908..5489494

Molecular Weight (calculated)

16749.9 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.499

Length

149 amino acids

Sequence
(BLAST)

001: MSSQVVAGHR ENAEVYTGEA LCKQKSRELL EEICLPKGLL PLEDLEEVGY NRSTGFVWLK QKKRKQHKFQ RIGRNVSYDT EVTAFVEKQR MKKLTGVKSK
101: ELLIWVTISD IYIDDPSSGK IAFGNSTTGI SRSFPVSAFD LDESNGSST

Best Arabidopsis Sequence Match ( AT5G46230.1 )
(BLAST)

001: MSSQETKSDQ REGAEICNGE SNCKQKAKEI LSTMNLPKGL LPLDNMTEIG HNKSTGYVWI KIKNKVQHRF KAIGRNVSYD SEVTAILENR RMSQLTGIKS
101: KEILIWVTIS EIFVNHQDPT QITFANPTGL SRTFPVTAFE EDE

Arabidopsis Description

At5g46230 [Source:UniProtKB/TrEMBL;Acc:Q9FL37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.