CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35153	Canola	cytosol	80.11	97.92
AT5G46230.1	Thale cress	cytosol	68.75	84.62
CDY43960	Canola	cytosol	64.77	80.85
CDX87732	Canola	cytosol	64.2	79.02
CDY33463	Canola	cytosol	64.2	78.47
CDY62357	Canola	cytosol	63.64	77.78
Solyc08g016580.1.1	Tomato	cytosol, extracellular	46.59	58.57
CDX90222	Canola	cytosol	32.39	58.16
PGSC0003DMT400024987	Potato	cytosol	45.45	57.14
Solyc02g070500.1.1	Tomato	cytosol	44.89	53.74
VIT_10s0003g03300.t01	Wine grape	cytosol	44.89	53.02
PGSC0003DMT400054524	Potato	cytosol	43.75	52.74
CDY35265	Canola	cytosol	41.48	52.14
TraesCSU01G231600.1	Wheat	cytosol	34.66	48.41
TraesCS3B01G594700.1	Wheat	cytosol	40.34	47.33
TraesCS3B01G586700.1	Wheat	cytosol	40.34	47.33
TraesCS3B01G554700.1	Wheat	cytosol	39.2	46.31
TraesCS3A01G132500.1	Wheat	cytosol	39.2	46.31
EER89876	Sorghum	cytosol	40.34	46.1
TraesCS3B01G579600.1	Wheat	cytosol	39.2	46.0
TraesCS3D01G148700.1	Wheat	cytosol	38.64	45.64
TraesCS3B01G605800.1	Wheat	cytosol	39.2	45.39
TraesCSU01G243200.1	Wheat	cytosol	38.64	45.33
KRH11189	Soybean	cytosol	41.48	45.06
TraesCS3B01G053600.1	Wheat	cytosol	36.93	44.83
TraesCS3B01G606500.1	Wheat	cytosol	39.2	44.81
TraesCS3B01G554600.1	Wheat	cytosol	38.07	44.67
TraesCS3A01G132600.1	Wheat	cytosol	40.34	44.65
GSMUA_Achr10P...	Banana	cytosol	39.2	44.23
TraesCS3D01G148900.1	Wheat	cytosol	39.77	44.03
TraesCS3B01G167000.1	Wheat	cytosol	39.2	43.4
GSMUA_Achr7P13960_001	Banana	cytosol	38.64	43.31
EES00076	Sorghum	cytosol	42.05	43.27
Zm00001d037018_P001	Maize	cytosol, extracellular, mitochondrion, plastid	39.2	42.86
Zm00001d008910_P001	Maize	cytosol	30.68	42.86
GSMUA_Achr10P...	Banana	cytosol	36.93	42.76
TraesCS7A01G346000.1	Wheat	cytosol	38.07	42.68
TraesCS3B01G586600.1	Wheat	cytosol	28.41	42.37
CDY57268	Canola	cytosol	34.66	42.36
CDY04373	Canola	cytosol	34.66	42.36
TraesCS7D01G333200.1	Wheat	cytosol	37.5	42.04
TraesCS7B01G237200.1	Wheat	cytosol	37.5	42.04
Os01t0210600-02	Rice	cytosol, extracellular, plasma membrane, plastid	39.77	41.92
CDX93512	Canola	cytosol	32.95	41.13
CDX95276	Canola	cytosol	34.66	39.35
CDY41704	Canola	cytosol	34.66	39.35
CDY48399	Canola	cytosol	35.23	37.35
CDX92616	Canola	cytosol	32.95	36.94
CDY10988	Canola	cytosol	32.39	36.31
CDY03486	Canola	cytosol	31.25	35.03
CDY34258	Canola	cytosol	31.25	35.03
CDY32168	Canola	cytosol	32.95	34.52
CDY31099	Canola	cytosol	32.95	34.32
Os06t0538900-01	Rice	plastid	36.36	33.68
HORVU3Hr1G028780.1	Barley	plastid	43.75	31.17
CDY05614	Canola	cytosol	27.27	28.74
CDY33893	Canola	cytosol	26.7	27.98
CDX85421	Canola	cytosol	26.7	27.65
CDX86223	Canola	cytosol	26.7	27.49

Protein Annotations

EnsemblPlants:CDY03234	EnsemblPlantsGene:GSBRNA2T00115751001	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758
PANTHER:PTHR31676	PANTHER:PTHR31676:SF7	PFAM:PF04398	ProteinID:CDY03234	ProteinID:CDY03234.1	SUPFAM:SSF141562
UniParc:UPI0004EED44D	MapMan:35.2	:	:	:	:

Description

BnaC09g19220D

Coordinates

chrLK031941:+:993252..999675

Molecular Weight (calculated)

20048.1 Da

IEP (calculated)

9.993

GRAVY (calculated)

-0.534

Length

176 amino acids

Sequence
(BLAST)

001: MSLKVTNLKT YIYKKPSTIP HIHKPSSQQT NLMSSLETKP DQREGAEIFN VGSTCKQKAN EILSTMNLPK GLLPLDNMTE IGHNKTTGYI WIKINKNVQH
101: RFKAIGRNVS YDSEVTAFVE NRRMRSLTGI KSKELLLWVT ISEIFVNDQD QTKITFANPT GLSRTFPVTA FEEEEK

Best Arabidopsis Sequence Match ( AT5G46230.1 )
(BLAST)

001: MSSQETKSDQ REGAEICNGE SNCKQKAKEI LSTMNLPKGL LPLDNMTEIG HNKSTGYVWI KIKNKVQHRF KAIGRNVSYD SEVTAILENR RMSQLTGIKS
101: KEILIWVTIS EIFVNHQDPT QITFANPTGL SRTFPVTAFE EDE

Arabidopsis Description

At5g46230 [Source:UniProtKB/TrEMBL;Acc:Q9FL37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.