CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010024.1-P	Field mustard	cytosol	100.0	100.0
CDX85421	Canola	cytosol	98.25	98.82
CDY05614	Canola	cytosol	81.29	83.23
CDY33893	Canola	cytosol	81.29	82.74
AT5G49600.1	Thale cress	cytosol	81.29	81.29
KRH50684	Soybean	cytosol	48.54	50.61
KRH02405	Soybean	cytosol	46.78	48.78
Solyc01g100750.2.1	Tomato	cytosol	43.27	45.4
VIT_14s0060g00900.t01	Wine grape	cytosol	43.86	45.18
Solyc01g100760.2.1	Tomato	cytosol	42.11	43.9
PGSC0003DMT400007217	Potato	cytosol	42.69	43.71
Solyc01g100770.2.1	Tomato	cytosol	40.94	42.68
CDX93512	Canola	cytosol	35.09	42.55
CDY57268	Canola	cytosol	35.67	42.36
CDY04373	Canola	cytosol	35.09	41.67
GSMUA_Achr3P12720_001	Banana	cytosol	39.18	41.1
PGSC0003DMT400007216	Potato	cytosol	40.94	40.0
CDX95276	Canola	cytosol	35.67	39.35
CDY41704	Canola	cytosol	35.09	38.71
CDY48399	Canola	cytosol	35.67	36.75
CDY31099	Canola	cytosol	36.26	36.69
Zm00001d030642_P001	Maize	mitochondrion	25.15	36.13
CDY32168	Canola	cytosol	35.09	35.71
CDX87732	Canola	cytosol	28.66	34.27
CDY43960	Canola	cytosol	28.07	34.04
CDY35153	Canola	cytosol	28.07	33.33
TraesCS5A01G086600.1	Wheat	cytosol	34.5	33.15
TraesCSU01G068000.1	Wheat	cytosol	32.16	32.74
TraesCS4D01G143300.1	Wheat	cytosol	32.16	32.74
Os11t0683600-00	Rice	cytosol	32.16	32.74
CDX90222	Canola	cytosol	18.71	32.65
CDY10988	Canola	cytosol	29.82	32.48
CDX92616	Canola	cytosol	29.82	32.48
CDY62357	Canola	cytosol	26.9	31.94
CDY33463	Canola	cytosol	26.9	31.94
CDY03486	Canola	cytosol	28.66	31.21
Os12t0563600-03	Rice	cytosol, plasma membrane	36.84	31.03
EES08981	Sorghum	cytosol	30.41	30.95
Zm00001d052772_P001	Maize	cytosol	30.41	30.59
CDY34258	Canola	cytosol	28.07	30.57
CDY35265	Canola	cytosol	23.98	29.29
TraesCS5B01G092500.1	Wheat	cytosol	35.67	28.5
Zm00001d041578_P001	Maize	cytosol, mitochondrion	36.84	28.12
TraesCS5D01G100100.1	Wheat	cytosol	35.67	27.73
CDY03234	Canola	plastid	27.49	26.7
Zm00001d048649_P001	Maize	cytosol	28.07	25.67
EES16171	Sorghum	cytosol	36.26	25.31
TraesCS4A01G171900.1	Wheat	mitochondrion	31.58	24.77
HORVU5Hr1G022550.1	Barley	plastid	35.09	22.56

Protein Annotations

EnsemblPlants:CDX86223	EnsemblPlantsGene:GSBRNA2T00144318001	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758
PANTHER:PTHR31676	PANTHER:PTHR31676:SF34	PFAM:PF04398	ProteinID:CDX86223	ProteinID:CDX86223.1	SEG:seg
SUPFAM:SSF141562	UniParc:UPI000253EE71	MapMan:35.2	:	:	:

Description

BnaA06g29400D

Coordinates

chrLK031845:-:446932..447447

Molecular Weight (calculated)

19813.9 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.527

Length

171 amino acids

Sequence
(BLAST)

001: MVAEAMRIKA EVYHGDKTCR EIFGSLLSEI GLPNRLLSNQ EIEECGYVKD TGFVWLKHKK KNKDDKKRHQ DSFRFDNVMV CFEDEVTAYF QPNTIKKLTG
101: VKAKEFVVWI SLGEIHVNRP SGLITFKTQV GLLSKSLPLS VFEDVQGKHD VMEKPKQQDQ QKFNDPKIYL Y

Best Arabidopsis Sequence Match ( AT5G49600.1 )
(BLAST)

001: MVTEAMKAKA EVYHGDKTCR EKFGSLLSEI GLPNRLLSNK EIKECGYVKD TGFVWLKHKE KKKEDQKRRY QDLLRFDNVV VCFEDEVTAY FEPNRIKKLT
101: GVKAKEFMVW ISLGEIQVNR SSGLITFKTE VGLLSKSLPL SVFEDVHGDD HDLKEKPKKE LKLNKTKIYL Y

Arabidopsis Description

Similarity to unknown protein [Source:UniProtKB/TrEMBL;Acc:Q9FGY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.