Factsheet for VIT_14s0060g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33794	Soybean	cytosol	77.11	71.91
Solyc01g100750.2.1	Tomato	cytosol	66.27	67.48
PGSC0003DMT400007217	Potato	cytosol	67.47	67.07
Solyc01g100760.2.1	Tomato	cytosol	65.66	66.46
GSMUA_Achr3P12720_001	Banana	cytosol	65.06	66.26
Solyc01g100770.2.1	Tomato	cytosol	63.86	64.63
PGSC0003DMT400007216	Potato	cytosol	63.86	60.57
VIT_10s0003g03300.t01	Wine grape	cytosol	50.0	55.7
VIT_12s0028g02230.t01	Wine grape	cytosol	42.77	52.21
Os11t0683600-00	Rice	cytosol	51.2	50.6
VIT_10s0003g01210.t01	Wine grape	cytosol	40.36	50.38
EES08981	Sorghum	cytosol	50.0	49.4
Zm00001d052772_P001	Maize	cytosol	50.0	48.82
TraesCS4D01G143300.1	Wheat	cytosol	49.4	48.81
TraesCSU01G068000.1	Wheat	cytosol	48.8	48.21
CDY05614	Canola	cytosol	46.39	46.11
CDY33893	Canola	cytosol	45.78	45.24
VIT_02s0025g02540.t01	Wine grape	cytosol	42.17	45.16
Bra020626.1-P	Field mustard	cytosol	46.39	45.03
Zm00001d030642_P001	Maize	mitochondrion	31.93	44.54
TraesCS5A01G086600.1	Wheat	cytosol	47.59	44.38
CDX86223	Canola	cytosol	45.18	43.86
Bra010024.1-P	Field mustard	cytosol	45.18	43.86
AT5G49600.1	Thale cress	cytosol	45.18	43.86
CDX85421	Canola	cytosol	44.58	43.53
Os12t0563600-03	Rice	cytosol, plasma membrane	51.81	42.36
Zm00001d048649_P001	Maize	cytosol	47.59	42.25
Zm00001d041578_P001	Maize	cytosol, mitochondrion	51.81	38.39
TraesCS5B01G092500.1	Wheat	cytosol	48.8	37.85
TraesCS5D01G100100.1	Wheat	cytosol	48.8	36.82
TraesCS4A01G171900.1	Wheat	mitochondrion	48.19	36.7
EES16171	Sorghum	cytosol	50.6	34.29
HORVU5Hr1G022550.1	Barley	plastid	48.8	30.45

Protein Annotations

EntrezGene:100245914	wikigene:100245914	Gene3D:2.30.240.10	MapMan:35.2	InterPro:At5g01610-like	ProteinID:CCB61929
ProteinID:CCB61929.1	InterPro:DUF538	UniProt:F6I4U2	EMBL:FN596746	InterPro:IPR036758	EntrezGene:LOC100245914
wikigene:LOC100245914	PFAM:PF04398	PANTHER:PTHR31676	PANTHER:PTHR31676:SF10	SUPFAM:SSF141562	TIGR:TC54948
UniParc:UPI0001984ACD	ArrayExpress:VIT_14s0060g00900	EnsemblPlantsGene:VIT_14s0060g00900	EnsemblPlants:VIT_14s0060g00900.t01	unigene:Vvi.8789	RefSeq:XP_002281636
RefSeq:XP_002281636.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:697078..697795

Molecular Weight (calculated)

18729.8 Da

IEP (calculated)

5.892

GRAVY (calculated)

-0.296

Length

166 amino acids

Sequence
(BLAST)

001: MALVREEIKA NAEVYHGDEI CQEKSKLLLT EVGLPNGLLP LQDIEECGYV RETGFVWLKQ KKKTIHKFEK IGKLVSYEPE ITAYVEQNKI KKLTGVKTKE
101: LLLWITLSDI YVDDPPTGKI TFKTPAGLFR SFPVSAFVLE DVKDVKKAMD VKKAEEEAGS GEVKEV

Best Arabidopsis Sequence Match ( AT1G09310.1 )
(BLAST)

001: MGLVTEEVRA KAEMYTGDEI CREKTKCFLK EISMPNGLLP LKDIEEVGYD RESGVVWLKQ KKSITHKFTE IDKLVSYGTE VTAIVETGKI KKLTGVKAKE
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA

Arabidopsis Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.