Factsheet for Solyc08g016580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024987	Potato	cytosol	92.86	92.86
Solyc02g070500.1.1	Tomato	cytosol	71.43	68.03
Bra022026.1-P	Field mustard	cytosol	62.14	61.7
CDY43960	Canola	cytosol	62.14	61.7
VIT_10s0003g03300.t01	Wine grape	cytosol	65.0	61.07
CDX87732	Canola	cytosol	60.0	58.74
AT5G46230.1	Thale cress	cytosol	59.29	58.04
CDY33463	Canola	cytosol	58.57	56.94
Bra025029.1-P	Field mustard	cytosol	58.57	56.94
CDY62357	Canola	cytosol	58.57	56.94
CDY35153	Canola	cytosol	57.86	56.25
Bra017568.1-P	Field mustard	cytosol	57.86	56.25
CDX90222	Canola	cytosol	37.86	54.08
Bra010803.1-P	Field mustard	cytosol	37.86	54.08
TraesCS3B01G586700.1	Wheat	cytosol	57.14	53.33
TraesCS3B01G554700.1	Wheat	cytosol	56.43	53.02
TraesCS3B01G594700.1	Wheat	cytosol	56.43	52.67
TraesCS3B01G579600.1	Wheat	cytosol	55.71	52.0
TraesCS3B01G554600.1	Wheat	cytosol	55.71	52.0
TraesCSU01G243200.1	Wheat	cytosol	55.71	52.0
TraesCS3B01G605800.1	Wheat	cytosol	56.43	51.97
TraesCS3A01G132500.1	Wheat	cytosol	55.0	51.68
TraesCSU01G231600.1	Wheat	cytosol	46.43	51.59
GSMUA_Achr10P...	Banana	cytosol	55.71	51.32
TraesCS3D01G148700.1	Wheat	cytosol	54.29	51.01
GSMUA_Achr7P13960_001	Banana	cytosol	57.14	50.96
TraesCS3B01G586600.1	Wheat	cytosol	42.86	50.85
TraesCS3B01G053600.1	Wheat	cytosol	52.14	50.34
TraesCS3B01G606500.1	Wheat	cytosol	55.0	50.0
TraesCS3A01G132600.1	Wheat	cytosol	56.43	49.69
TraesCS3D01G148900.1	Wheat	cytosol	56.43	49.69
TraesCS3B01G167000.1	Wheat	cytosol	55.71	49.06
GSMUA_Achr10P...	Banana	cytosol	54.29	48.72
CDY35265	Canola	cytosol	48.57	48.57
CDY03234	Canola	plastid	58.57	46.59
EER89876	Sorghum	cytosol	50.71	46.1
KRH11189	Soybean	cytosol	52.86	45.68
Solyc01g100760.2.1	Tomato	cytosol	52.86	45.12
EES00076	Sorghum	cytosol	55.0	45.03
TraesCS7A01G346000.1	Wheat	cytosol	50.0	44.59
Solyc01g100750.2.1	Tomato	cytosol	51.43	44.17
Zm00001d037018_P001	Maize	cytosol, extracellular, mitochondrion, plastid	50.71	44.1
TraesCS7B01G237200.1	Wheat	cytosol	49.29	43.95
TraesCS7D01G333200.1	Wheat	cytosol	49.29	43.95
Os01t0210600-02	Rice	cytosol, extracellular, plasma membrane, plastid	52.14	43.71
Solyc01g100770.2.1	Tomato	cytosol	50.0	42.68
Solyc08g083090.1.1	Tomato	cytosol	46.43	42.21
Zm00001d008910_P001	Maize	cytosol	37.14	41.27
Solyc03g006180.2.1	Tomato	cytosol	22.86	41.03
AT1G30020.1	Thale cress	cytosol	40.71	36.31
Os06t0538900-01	Rice	plastid	47.86	35.26
HORVU3Hr1G028780.1	Barley	plastid	56.43	31.98
Solyc02g076890.1.1	Tomato	cytosol	30.0	30.88

Protein Annotations

EnsemblPlants:Solyc08g016580.1.1	EnsemblPlantsGene:Solyc08g016580.1	Gene3D:2.30.240.10	InterPro:At5g01610-like	InterPro:DUF538	InterPro:IPR036758
PANTHER:PTHR31676	PANTHER:PTHR31676:SF7	PFAM:PF04398	SUPFAM:SSF141562	UniParc:UPI000276B87B	UniProt:K4CJI0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:7980932..7981354

Molecular Weight (calculated)

15973.4 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.399

Length

140 amino acids

Sequence
(BLAST)

001: MSSQVTENQR ENAEIFTGPT ICKQKSQQLL EQINMPKGLL PLDDLIEIGH NKQTGFVWLK QKKAKENRFK KIGKLVWYDT EVTGFLEDRR MKKLTGVKSK
101: ELLIWVTISD ISIQVSDLEK ITFATPSGIS KAFPVSAFEE

Best Arabidopsis Sequence Match ( AT5G46230.1 )
(BLAST)

001: MSSQETKSDQ REGAEICNGE SNCKQKAKEI LSTMNLPKGL LPLDNMTEIG HNKSTGYVWI KIKNKVQHRF KAIGRNVSYD SEVTAILENR RMSQLTGIKS
101: KEILIWVTIS EIFVNHQDPT QITFANPTGL SRTFPVTAFE EDE

Arabidopsis Description

At5g46230 [Source:UniProtKB/TrEMBL;Acc:Q9FL37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.