Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 5
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39504 | Canola | endoplasmic reticulum, golgi, plasma membrane | 56.37 | 63.17 |
| AT4G15080.2 | Thale cress | golgi | 61.19 | 60.17 |
| CDY58751 | Canola | endoplasmic reticulum, golgi, plasma membrane | 51.84 | 56.83 |
| Bra023847.1-P | Field mustard | plasma membrane | 52.41 | 54.98 |
| GSMUA_Achr8P33480_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 44.33 | 54.72 |
| GSMUA_Achr7P03550_001 | Banana | golgi | 42.92 | 53.82 |
| VIT_03s0017g01770.t01 | Wine grape | plasma membrane | 54.67 | 52.3 |
| Solyc05g016030.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 52.97 | 51.94 |
| GSMUA_Achr11P... | Banana | golgi | 42.49 | 51.81 |
| KRH29083 | Soybean | plasma membrane | 52.12 | 50.0 |
| KRH24108 | Soybean | plasma membrane | 52.27 | 49.93 |
| TraesCS5B01G368600.1 | Wheat | plasma membrane | 45.61 | 46.73 |
| TraesCS7A01G277000.1 | Wheat | golgi | 43.06 | 46.63 |
| Os09t0563250-01 | Rice | plasma membrane | 45.75 | 46.14 |
| TraesCS7B01G174700.1 | Wheat | golgi | 42.49 | 46.01 |
| TraesCS7D01G277000.2 | Wheat | golgi | 42.49 | 45.87 |
| KXG35088 | Sorghum | golgi | 45.75 | 45.56 |
| KXG25411 | Sorghum | golgi | 45.04 | 45.43 |
| Zm00001d031977_P001 | Maize | golgi | 43.63 | 45.16 |
| TraesCS5D01G375800.1 | Wheat | plasma membrane | 44.05 | 45.14 |
| TraesCS5A01G366200.1 | Wheat | plasma membrane | 43.91 | 44.99 |
| HORVU5Hr1G090020.3 | Barley | endoplasmic reticulum, plasma membrane | 44.19 | 44.38 |
| AT2G33640.1 | Thale cress | plasma membrane | 34.84 | 43.54 |
| HORVU7Hr1G058360.1 | Barley | nucleus, peroxisome | 42.21 | 41.97 |
| Zm00001d019637_P001 | Maize | plasma membrane | 44.33 | 39.77 |
| AT1G69420.1 | Thale cress | plasma membrane | 25.92 | 30.7 |
| AT4G01730.1 | Thale cress | plasma membrane | 18.56 | 25.79 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821782 | ProteinID:AEE76598.1 | ArrayExpress:AT3G22180 | EnsemblPlantsGene:AT3G22180 | RefSeq:AT3G22180 |
| TAIR:AT3G22180 | RefSeq:AT3G22180-TAIR-G | EnsemblPlants:AT3G22180.1 | TAIR:AT3G22180.1 | Unigene:At.37920 | ProteinID:BAB03066.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0019706 |
| GO:GO:0030659 | GO:GO:0031410 | RefSeq:NP_188857.1 | PFAM:PF01529 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50216 | PANTHER:PTHR22883 | PANTHER:PTHR22883:SF15 | InterPro:Palmitoyltrfase_DHHC |
| UniProt:Q9LIE4 | TMHMM:TMhelix | UniParc:UPI00001634CF | SEG:seg | : | : |
Description
PAT20Probable protein S-acyltransferase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIE4]
Coordinates
chr3:+:7827036..7830856
Molecular Weight (calculated)
76878.4 Da
IEP (calculated)
8.273
GRAVY (calculated)
-0.156
Length
706 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRKHGWQLP AHTLQVIAIT VFCLLVVAFY AFFAPFVGGR IWEYVLIGVY SPVAILVFVL YVRCTAINPA DPRIMSIFDT GVNGDGMVRG LSRNYDETGS
101: QLQASPSVVS RSSTVAGNSS VKGSVEDAQR VESVSRRSCY NPLAVFCYVF VVEDCRKKEG PAEEQGNSEE ALFCTLCNCE VRKFSKHCRS CDKCVDCFDH
201: HCKWLNNCVG RKNYVTFVSL MSASLLWLII EAAVGIAVIV RVFVNKQTME TEIVNRLGNS FSRAPLAAVV GLCTAVAIFA CFPLGELLFF HMLLIKKGIT
301: TYEYVVAMRA MSEAPDGASV DEEIQNVLYS PTGSATTGFS GGSSLGLPYR GVWCTPPRVF DNQDEVIPHL DPCMVPSTVD PDAPGSEKGT KALKRPVKRN
401: AWKLAKLDPN EAARAAARAR ASSSVLRPID NRHLPDNDLS SIGTVSIISS VSTDANVAAS KEIRNNDLRS SLSRNSFAPS QGSRDEYDTG SHGMSNLSSP
501: SHVHESVTLA PLPQNPTIVG NRFTATSHHM HSTFDDKVLH RGNDADPLFL FAPATSHLRD VRKTSVVWDP EAGRYVSAPV TTTSEVRNRL LNPSSQTAST
601: QNPRPILPAH DSSSGSSALR DPLPLHQAER RLTYTGDSIF YGGPLINIPT RDTPRSGRGL VRDVQDRLAS TVHRDARIRR DSTSNQLPVF APGGLGANSQ
701: TGSNIK
101: QLQASPSVVS RSSTVAGNSS VKGSVEDAQR VESVSRRSCY NPLAVFCYVF VVEDCRKKEG PAEEQGNSEE ALFCTLCNCE VRKFSKHCRS CDKCVDCFDH
201: HCKWLNNCVG RKNYVTFVSL MSASLLWLII EAAVGIAVIV RVFVNKQTME TEIVNRLGNS FSRAPLAAVV GLCTAVAIFA CFPLGELLFF HMLLIKKGIT
301: TYEYVVAMRA MSEAPDGASV DEEIQNVLYS PTGSATTGFS GGSSLGLPYR GVWCTPPRVF DNQDEVIPHL DPCMVPSTVD PDAPGSEKGT KALKRPVKRN
401: AWKLAKLDPN EAARAAARAR ASSSVLRPID NRHLPDNDLS SIGTVSIISS VSTDANVAAS KEIRNNDLRS SLSRNSFAPS QGSRDEYDTG SHGMSNLSSP
501: SHVHESVTLA PLPQNPTIVG NRFTATSHHM HSTFDDKVLH RGNDADPLFL FAPATSHLRD VRKTSVVWDP EAGRYVSAPV TTTSEVRNRL LNPSSQTAST
601: QNPRPILPAH DSSSGSSALR DPLPLHQAER RLTYTGDSIF YGGPLINIPT RDTPRSGRGL VRDVQDRLAS TVHRDARIRR DSTSNQLPVF APGGLGANSQ
701: TGSNIK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.