Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G50280.1 | Thale cress | cytosol | 65.4 | 66.14 |
| AT3G50290.1 | Thale cress | cytosol | 37.95 | 62.27 |
| AT5G38130.1 | Thale cress | cytosol, plasma membrane | 62.72 | 60.82 |
| AT3G50270.1 | Thale cress | plastid | 58.93 | 58.67 |
| AT5G67150.1 | Thale cress | cytosol | 54.91 | 54.91 |
| AT5G67160.1 | Thale cress | cytosol | 48.88 | 50.46 |
| AT5G42830.1 | Thale cress | cytosol | 32.81 | 32.67 |
| AT5G07860.1 | Thale cress | cytosol | 32.81 | 32.38 |
| AT5G07850.1 | Thale cress | cytosol | 32.14 | 31.58 |
| AT5G07870.1 | Thale cress | cytosol | 31.7 | 30.6 |
| AT5G01210.1 | Thale cress | cytosol | 31.92 | 30.11 |
| AT2G39980.1 | Thale cress | cytosol, plastid | 31.47 | 29.25 |
| AT5G23940.1 | Thale cress | mitochondrion | 28.35 | 26.24 |
Protein Annotations
| Gene3D:3.30.559.10 | MapMan:50.2.3 | EntrezGene:824192 | UniProt:A0A178V9Z6 | ProteinID:AEE78650.1 | ArrayExpress:AT3G50300 |
| EnsemblPlantsGene:AT3G50300 | RefSeq:AT3G50300 | TAIR:AT3G50300 | RefSeq:AT3G50300-TAIR-G | EnsemblPlants:AT3G50300.1 | TAIR:AT3G50300.1 |
| InterPro:CAT-like_dom_sf | UniProt:F4J0K8 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0016747 |
| InterPro:IPR023213 | RefSeq:NP_190599.2 | ProteinID:OAP02736.1 | PFAM:PF02458 | PO:PO:0009005 | PO:PO:0020100 |
| PANTHER:PTHR31896 | PANTHER:PTHR31896:SF12 | InterPro:Transferase | UniParc:UPI000034EFDE | : | : |
Description
HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:F4J0K8]
Coordinates
chr3:+:18643860..18645510
Molecular Weight (calculated)
50251.9 Da
IEP (calculated)
6.459
GRAVY (calculated)
-0.162
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDVTVISSS IVQPGNARHS GREKIHLTPS DLSLLYLNYP QRSLLFPKPY PETRFISRLK SSLSTSLEIY FPLAGRLVKV NNHEDNTVSF YIDCDDGRGV
101: KFVHAIAESV SVSDILQPHG SVPDFFRLFF PMNGVRSIDG LSEPLLALQV TEIKDGIVIS FGYNHLVADG SSMWNFIHVW SKLCLNGQWE IHQPLVLRGW
201: FLDNIDFPIH IPASEIETER ARNREVSTKE RVFHFTKEKL SDLKAKANDE IGSSDIKISS LQAVLAHLWR SIVRHSGLNQ EEESRCGVAA DFRQRLNPPL
301: DKDCFGNVAN LGLTTATVGD LLDRGLGWAA LQINKTVRLH TNENFRTFSE NWVRNGKIPR IDVRSRMGDH GFMVSNSPWF QVYDNDFGLG KPMAVRAGPA
401: NGIGGKLVVF RGIEEGSIDV HAILTLSLWS DVLLNLFDDV ESLENVIT
101: KFVHAIAESV SVSDILQPHG SVPDFFRLFF PMNGVRSIDG LSEPLLALQV TEIKDGIVIS FGYNHLVADG SSMWNFIHVW SKLCLNGQWE IHQPLVLRGW
201: FLDNIDFPIH IPASEIETER ARNREVSTKE RVFHFTKEKL SDLKAKANDE IGSSDIKISS LQAVLAHLWR SIVRHSGLNQ EEESRCGVAA DFRQRLNPPL
301: DKDCFGNVAN LGLTTATVGD LLDRGLGWAA LQINKTVRLH TNENFRTFSE NWVRNGKIPR IDVRSRMGDH GFMVSNSPWF QVYDNDFGLG KPMAVRAGPA
401: NGIGGKLVVF RGIEEGSIDV HAILTLSLWS DVLLNLFDDV ESLENVIT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.