Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74815 | Canola | cytosol, plastid | 78.63 | 87.33 |
| Bra004996.1-P | Field mustard | cytosol | 86.51 | 87.06 |
| CDY24938 | Canola | cytosol, plastid | 82.37 | 86.49 |
| Bra017041.1-P | Field mustard | cytosol | 82.78 | 84.89 |
| CDY07045 | Canola | peroxisome | 78.63 | 84.22 |
| CDX93218 | Canola | peroxisome | 78.01 | 83.37 |
| PGSC0003DMT400069898 | Potato | cytosol | 67.43 | 71.12 |
| PGSC0003DMT400069755 | Potato | cytosol, plastid | 68.26 | 71.06 |
| Solyc05g052680.1.1 | Tomato | cytosol, plastid | 66.81 | 70.46 |
| PGSC0003DMT400069897 | Potato | plastid | 67.01 | 70.22 |
| Solyc05g052670.1.1 | Tomato | plastid | 66.6 | 69.63 |
| VIT_13s0019g03430.t01 | Wine grape | cytosol, peroxisome, plastid | 66.81 | 66.12 |
| AT5G01210.1 | Thale cress | cytosol | 59.54 | 60.42 |
| KRG97771 | Soybean | plastid | 56.22 | 57.29 |
| KRH31113 | Soybean | plastid | 55.81 | 54.56 |
| GSMUA_Achr10P... | Banana | plastid | 47.3 | 54.42 |
| GSMUA_Achr8P19570_001 | Banana | plastid | 46.68 | 53.32 |
| Zm00001d042826_P001 | Maize | plastid | 52.07 | 51.86 |
| Os01t0854000-01 | Rice | plastid | 51.87 | 51.76 |
| EES01771 | Sorghum | plastid | 53.11 | 51.72 |
| TraesCS3A01G367900.1 | Wheat | plastid | 52.28 | 51.12 |
| TraesCS3D01G360900.1 | Wheat | plastid | 52.07 | 50.91 |
| TraesCS3B01G399600.1 | Wheat | plastid | 51.66 | 50.61 |
| GSMUA_AchrUn_... | Banana | plastid | 43.57 | 50.6 |
| Os05t0449200-01 | Rice | plastid | 50.21 | 50.42 |
| Zm00001d012333_P001 | Maize | plastid | 52.9 | 50.0 |
| Zm00001d010079_P001 | Maize | plastid | 51.24 | 49.6 |
| EES19625 | Sorghum | plastid | 51.45 | 48.16 |
| HORVU3Hr1G085100.2 | Barley | plastid | 52.28 | 47.19 |
| TraesCS1A01G278800.1 | Wheat | cytosol, plastid | 51.04 | 46.59 |
| TraesCS1B01G287800.1 | Wheat | cytosol, plastid | 50.41 | 46.11 |
| HORVU1Hr1G073330.1 | Barley | cytosol | 50.62 | 43.81 |
| TraesCS1D01G278100.1 | Wheat | plastid | 50.83 | 42.91 |
| AT5G42830.1 | Thale cress | cytosol | 37.55 | 40.22 |
| AT5G07850.1 | Thale cress | cytosol | 37.97 | 40.13 |
| AT5G07860.1 | Thale cress | cytosol | 36.51 | 38.77 |
| AT5G07870.1 | Thale cress | cytosol | 36.31 | 37.72 |
| AT5G67150.1 | Thale cress | cytosol | 31.74 | 34.15 |
| AT3G50280.1 | Thale cress | cytosol | 30.08 | 32.73 |
| AT3G50270.1 | Thale cress | plastid | 29.88 | 32.0 |
| AT3G50300.1 | Thale cress | cytosol | 29.25 | 31.47 |
| AT3G50290.1 | Thale cress | cytosol | 17.63 | 31.14 |
| AT5G67160.1 | Thale cress | cytosol | 27.18 | 30.18 |
| AT5G38130.1 | Thale cress | cytosol, plasma membrane | 27.8 | 29.0 |
| AT5G23940.1 | Thale cress | mitochondrion | 29.05 | 28.93 |
Protein Annotations
| Gene3D:3.30.559.10 | MapMan:50.2.3 | EntrezGene:818586 | UniProt:A0A178VUK1 | ProteinID:AAB95283.1 | ProteinID:ABE65472.1 |
| ProteinID:AEC09758.1 | EMBL:AF372968 | ArrayExpress:AT2G39980 | EnsemblPlantsGene:AT2G39980 | RefSeq:AT2G39980 | TAIR:AT2G39980 |
| RefSeq:AT2G39980-TAIR-G | EnsemblPlants:AT2G39980.1 | TAIR:AT2G39980.1 | EMBL:AY124856 | Unigene:At.21041 | InterPro:CAT-like_dom_sf |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0016740 | GO:GO:0016746 |
| GO:GO:0016747 | GO:GO:0080167 | InterPro:IPR023213 | RefSeq:NP_181527.1 | UniProt:O04201 | ProteinID:OAP09496.1 |
| PFAM:PF02458 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31896 |
| PANTHER:PTHR31896:SF11 | InterPro:Transferase | UniParc:UPI00000396F7 | : | : | : |
Description
At2g39980/T28M21.14 [Source:UniProtKB/TrEMBL;Acc:O04201]
Coordinates
chr2:-:16687673..16690182
Molecular Weight (calculated)
52885.1 Da
IEP (calculated)
7.972
GRAVY (calculated)
-0.172
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLEKSVTI ISRNRVFPDQ KSTLVDLKLS VSDLPMLSCH YIQKGCLFTC PNLPLPALIS HLKHSLSITL THFPPLAGRL STSSSGHVFL TCNDAGADFV
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.