Factsheet for PGSC0003DMT400069898

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052680.1.1	Tomato	cytosol, plastid	94.75	94.75
PGSC0003DMT400069755	Potato	cytosol, plastid	92.56	91.36
PGSC0003DMT400069897	Potato	plastid	90.81	90.22
VIT_13s0019g03430.t01	Wine grape	cytosol, peroxisome, plastid	75.27	70.64
KRH73150	Soybean	cytosol, plastid	71.33	68.2
CDX74815	Canola	cytosol, plastid	64.11	67.51
AT2G39980.1	Thale cress	cytosol, plastid	71.12	67.43
KRH14988	Soybean	cytosol, plastid	69.58	66.39
CDY07045	Canola	peroxisome	64.99	66.0
CDX93218	Canola	peroxisome	64.55	65.41
CDY24938	Canola	cytosol, plastid	65.43	65.14
Bra004996.1-P	Field mustard	cytosol	68.05	64.93
Bra017041.1-P	Field mustard	cytosol	65.65	63.83
PGSC0003DMT400052409	Potato	cytosol, plastid	63.68	63.26
GSMUA_Achr10P...	Banana	plastid	49.89	54.42
GSMUA_Achr8P19570_001	Banana	plastid	49.23	53.32
Os05t0449200-01	Rice	plastid	53.61	51.04
Os01t0854000-01	Rice	plastid	53.83	50.93
Zm00001d042826_P001	Maize	plastid	53.61	50.62
GSMUA_AchrUn_...	Banana	plastid	45.73	50.36
EES01771	Sorghum	plastid	54.27	50.1
TraesCS3D01G360900.1	Wheat	plastid	53.39	49.49
TraesCS3A01G367900.1	Wheat	plastid	53.39	49.49
TraesCS3B01G399600.1	Wheat	plastid	52.95	49.19
Zm00001d010079_P001	Maize	plastid	53.39	49.0
Zm00001d012333_P001	Maize	plastid	53.83	48.24
EES19625	Sorghum	plastid	53.83	47.77
TraesCS1A01G278800.1	Wheat	cytosol, plastid	53.17	46.02
TraesCS1B01G287800.1	Wheat	cytosol, plastid	52.95	45.92
HORVU3Hr1G085100.2	Barley	plastid	52.95	45.32
HORVU1Hr1G073330.1	Barley	cytosol	53.17	43.63
PGSC0003DMT400084781	Potato	cytosol	42.67	43.33
TraesCS1D01G278100.1	Wheat	plastid	53.17	42.56
PGSC0003DMT400020526	Potato	cytosol	41.58	41.76
PGSC0003DMT400048721	Potato	plasma membrane	34.14	39.8
PGSC0003DMT400010306	Potato	cytosol	37.86	38.36
PGSC0003DMT400066505	Potato	cytosol	35.89	34.82
PGSC0003DMT400066504	Potato	cytosol, mitochondrion, peroxisome	35.45	34.69
PGSC0003DMT400066507	Potato	cytosol, nucleus, peroxisome	35.01	34.04
PGSC0003DMT400026230	Potato	cytosol	29.32	33.25
PGSC0003DMT400075303	Potato	cytosol	21.44	33.22
PGSC0003DMT400040083	Potato	extracellular	19.91	32.62
PGSC0003DMT400093343	Potato	extracellular, plasma membrane	11.82	25.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400069898	EnsemblPlantsGene:PGSC0003DMG400027181	EntrezGene:102585403	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31896
PANTHER:PTHR31896:SF11	PFAM:PF02458	PGSC:PGSC0003DMG400027181	RefSeq:XP_006355660.1	SEG:seg	UniParc:UPI0002963568
UniProt:M1CLC0	MapMan:35.1	:	:	:	:

Description

Transferase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027181]

Coordinates

chr5:-:47968755..47970270

Molecular Weight (calculated)

51071.3 Da

IEP (calculated)

6.843

GRAVY (calculated)

-0.089

Length

457 amino acids

Sequence
(BLAST)

001: MTTAPVALVS KCTIFPSEKS SLPDLKLSVS DLPMLSVHYI QKGCLFTRPP FPIPQLISLL KLSLSQTLTH FPPLAGRFVT DSDGYVYITC NDEGVDFVHA
101: TATHIFIRDV IGSIDVPDHV KEFFPLDRTV SYRGHFIPLL AVQVTELADG VFIGCAVNHS VTDGTSIWNF FNTFAEVSRG VKRIVRQPDF TRDSVLISNS
201: VLKLPADGPE ITFSGDAPLR ERIFSFSRES ILKLKAKTNN QKLSFDGEIN IVELIAKQSN DHMKIKTETA EISSFQSLCA LLWRAVTRAR KFPPSKMTTF
301: RMAVNCRHRL QPKLNPLYFG NAIQSIPIYA SAGEVLSNDL YWCAEQLTKN VNAHDDVMVR KFVEDWEKDP RCFPLGNFDG AMLTMGSSPR FPMYDNDFGW
401: GRPVAVRSGR ANKFDGKISA FPGREGGGSV DLEVILSPET MEALESDPEF MQYVTVY

Best Arabidopsis Sequence Match ( AT2G39980.1 )
(BLAST)

001: MPSLEKSVTI ISRNRVFPDQ KSTLVDLKLS VSDLPMLSCH YIQKGCLFTC PNLPLPALIS HLKHSLSITL THFPPLAGRL STSSSGHVFL TCNDAGADFV
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK

Arabidopsis Description

At2g39980/T28M21.14 [Source:UniProtKB/TrEMBL;Acc:O04201]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.