CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74815	Canola	cytosol, plastid	83.66	88.48
CDX93218	Canola	peroxisome	83.44	84.92
CDY07045	Canola	peroxisome	82.14	83.78
AT2G39980.1	Thale cress	cytosol, plastid	86.49	82.37
PGSC0003DMT400069898	Potato	cytosol	65.14	65.43
PGSC0003DMT400069755	Potato	cytosol, plastid	65.58	65.01
PGSC0003DMT400069897	Potato	plastid	64.92	64.78
Solyc05g052680.1.1	Tomato	cytosol, plastid	64.49	64.77
Solyc05g052670.1.1	Tomato	plastid	64.92	64.64
VIT_13s0019g03430.t01	Wine grape	cytosol, peroxisome, plastid	66.45	62.63
CDY40314	Canola	cytosol	60.57	60.96
CDY48117	Canola	endoplasmic reticulum, nucleus, peroxisome	61.87	56.24
GSMUA_Achr10P...	Banana	plastid	50.98	55.85
CDY55902	Canola	endoplasmic reticulum, nucleus, peroxisome	61.66	55.71
KRG97771	Soybean	plastid	55.77	54.12
GSMUA_Achr8P19570_001	Banana	plastid	49.67	54.03
GSMUA_AchrUn_...	Banana	plastid	47.93	53.01
KRH31113	Soybean	plastid	56.43	52.54
Zm00001d042826_P001	Maize	plastid	53.38	50.62
Os01t0854000-01	Rice	plastid	53.16	50.52
EES01771	Sorghum	plastid	54.47	50.51
TraesCS3A01G367900.1	Wheat	plastid	53.59	49.9
Os05t0449200-01	Rice	plastid	52.07	49.79
TraesCS3D01G360900.1	Wheat	plastid	53.38	49.7
TraesCS3B01G399600.1	Wheat	plastid	52.94	49.39
Zm00001d012333_P001	Maize	plastid	54.03	48.63
Zm00001d010079_P001	Maize	plastid	52.07	47.99
EES19625	Sorghum	plastid	52.51	46.8
HORVU3Hr1G085100.2	Barley	plastid	53.59	46.07
TraesCS1A01G278800.1	Wheat	cytosol, plastid	52.07	45.27
TraesCS1B01G287800.1	Wheat	cytosol, plastid	51.42	44.78
CDY17759	Canola	cytosol	7.63	43.75
CDY14025	Canola	extracellular	14.38	43.42
CDY40772	Canola	cytosol, nucleus, plastid	38.34	42.62
HORVU1Hr1G073330.1	Barley	cytosol	51.63	42.55
CDY14027	Canola	cytosol, nucleus, plastid	37.47	41.85
CDX71519	Canola	cytosol, nucleus, plastid	40.74	41.65
TraesCS1D01G278100.1	Wheat	plastid	51.63	41.51
CDY21238	Canola	cytosol	39.65	40.53
CDY02424	Canola	cytosol	39.65	40.53
CDX81073	Canola	cytosol	39.43	39.26
CDX78313	Canola	cytosol	39.87	38.85
CDX81074	Canola	plastid	38.56	38.48
CDY40771	Canola	cytosol	37.91	35.88
CDY18724	Canola	cytosol	30.94	33.26
CDY14026	Canola	cytosol	18.52	33.2
CDX83118	Canola	mitochondrion, plastid	32.03	32.74
CDY04024	Canola	cytosol	11.33	32.7
CDX68582	Canola	mitochondrion	10.46	32.65
CDX97348	Canola	cytosol	16.78	32.35
CDY07540	Canola	cytosol	31.15	32.06
CDY01434	Canola	cytosol	30.94	31.91
CDX74510	Canola	cytosol	30.72	31.47
CDY61372	Canola	cytosol	16.56	31.41
CDX77413	Canola	cytosol, plastid	21.79	31.25
CDY40431	Canola	cytosol	29.85	30.44
CDY39539	Canola	cytosol, plastid	29.85	30.31
CDY12811	Canola	extracellular	31.15	30.23
CDY32573	Canola	cytosol	24.4	30.11
CDX83119	Canola	cytosol	11.76	29.83
CDY47247	Canola	plasma membrane	23.97	29.81
CDY01691	Canola	plastid	28.32	29.75
CDY47454	Canola	cytosol	29.63	29.69
CDX74540	Canola	cytosol	26.14	29.63
CDX80398	Canola	cytosol	29.41	29.09
CDY18638	Canola	cytosol	28.32	28.76
CDY30596	Canola	extracellular	16.78	28.73
CDY44265	Canola	cytosol	29.41	28.72
CDX81339	Canola	cytosol	28.1	28.54
CDX88059	Canola	cytosol	29.19	28.51
CDY01433	Canola	cytosol	26.8	28.15
CDY12812	Canola	cytosol	16.78	26.64
CDY66079	Canola	cytosol	6.54	16.48

Protein Annotations

EnsemblPlants:CDY24938	EnsemblPlantsGene:GSBRNA2T00028733001	Gene3D:3.30.559.10	GO:A0A078GK02	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31896
PANTHER:PTHR31896:SF11	PFAM:PF02458	ProteinID:CDY24938	ProteinID:CDY24938.1	SEG:seg	UniParc:UPI0004EF086A
UniProt:A0A078GK02	MapMan:50.2.3	:	:	:	:

Description

BnaC03g22340DBnaC03g22340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK02]

Coordinates

chrLK032166:+:334416..335852

Molecular Weight (calculated)

50721.5 Da

IEP (calculated)

7.908

GRAVY (calculated)

-0.241

Length

459 amino acids

Sequence
(BLAST)

001: MPSLENSVTL ISRSRVFPDQ KSTLADLKLS VSDLPMLSCH YIQKGCLFTR PHLPPHALLS HLKHSLSLTL SHFPPLAGRL STSQDGHVFL SCNDAGADFV
101: FAVAESVRVR DVIGGTDVPD VVKSFFSYDG AVSYEGHNRP ILGVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGVENVTRQP DFTRENVLIS
201: PAVLKMPHGG PKVTFNENEP LRERIFSFSR EQILELKEMV NKKRSSTLNG KENGKLTEML ESLLGRNDAV SVEISSFQSL CALLWRAITR ARKLPSSQTT
301: TFRMAVNVRH RLRPKLDPEY FGNAIQSVPT FATAGEVLSR DLRWTADQLN QSVAAHQDGK IRSVVADWEA NPRCFPLGNF DGAMVTMGSS PRFPMYDNNF
401: GWGKPVAVRS GRANKFDGKI SAFPGRDEKG SVDLEVVLAP ETMAGIESDG EFMRYVSKQ

Best Arabidopsis Sequence Match ( AT2G39980.1 )
(BLAST)

001: MPSLEKSVTI ISRNRVFPDQ KSTLVDLKLS VSDLPMLSCH YIQKGCLFTC PNLPLPALIS HLKHSLSITL THFPPLAGRL STSSSGHVFL TCNDAGADFV
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK

Arabidopsis Description

At2g39980/T28M21.14 [Source:UniProtKB/TrEMBL;Acc:O04201]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.