CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55902	Canola	endoplasmic reticulum, nucleus, peroxisome	96.44	95.87
Bra028893.1-P	Field mustard	cytosol, plastid	89.5	94.36
CDY40314	Canola	cytosol	80.2	88.82
AT5G01210.1	Thale cress	cytosol	81.39	86.53
KRH66032	Soybean	cytosol	62.97	68.09
KRH75833	Soybean	cytosol	62.97	67.09
VIT_08s0007g01930.t01	Wine grape	plastid	63.96	65.38
PGSC0003DMT400052409	Potato	cytosol, plastid	59.21	65.0
CDX74815	Canola	cytosol, plastid	55.84	64.98
CDY07045	Canola	peroxisome	57.62	64.67
Solyc09g014280.1.1	Tomato	cytosol, plastid	58.42	64.13
CDX93218	Canola	peroxisome	57.23	64.08
CDY24938	Canola	cytosol, plastid	56.24	61.87
GSMUA_Achr10P...	Banana	plastid	44.75	53.94
GSMUA_Achr8P19570_001	Banana	plastid	44.55	53.32
Zm00001d042826_P001	Maize	plastid	51.09	53.31
Os01t0854000-01	Rice	plastid	50.3	52.59
GSMUA_AchrUn_...	Banana	plastid	42.77	52.05
EES01771	Sorghum	plastid	50.89	51.92
Os05t0449200-01	Rice	plastid	49.11	51.67
TraesCS3B01G399600.1	Wheat	plastid	49.51	50.81
TraesCS3A01G367900.1	Wheat	plastid	49.51	50.71
TraesCS3D01G360900.1	Wheat	plastid	49.51	50.71
Zm00001d010079_P001	Maize	plastid	49.7	50.4
Zm00001d012333_P001	Maize	plastid	49.9	49.41
EES19625	Sorghum	plastid	50.3	49.32
TraesCS1A01G278800.1	Wheat	cytosol, plastid	49.7	47.54
TraesCS1B01G287800.1	Wheat	cytosol, plastid	49.31	47.25
HORVU3Hr1G085100.2	Barley	plastid	49.11	46.44
CDY14025	Canola	extracellular	13.47	44.74
HORVU1Hr1G073330.1	Barley	cytosol	49.11	44.52
TraesCS1D01G278100.1	Wheat	plastid	49.51	43.78
CDY17759	Canola	cytosol	6.53	41.25
CDX97348	Canola	cytosol	19.21	40.76
CDY40772	Canola	cytosol, nucleus, plastid	31.88	38.98
CDX71519	Canola	cytosol, nucleus, plastid	34.65	38.98
CDY14027	Canola	cytosol, nucleus, plastid	31.68	38.93
CDY61372	Canola	cytosol	18.61	38.84
CDY21238	Canola	cytosol	34.46	38.75
CDY02424	Canola	cytosol	34.06	38.31
CDX81073	Canola	cytosol	33.66	36.88
CDX81074	Canola	plastid	33.47	36.74
CDX78313	Canola	cytosol	33.86	36.31
CDY40771	Canola	cytosol	33.47	34.85
CDY04024	Canola	cytosol	10.69	33.96
CDX77413	Canola	cytosol, plastid	21.19	33.44
CDY18724	Canola	cytosol	28.12	33.26
CDY01434	Canola	cytosol	28.91	32.81
CDY07540	Canola	cytosol	28.71	32.51
CDX80398	Canola	cytosol	29.7	32.33
CDX83119	Canola	cytosol	11.49	32.04
CDY40431	Canola	cytosol	28.51	32.0
CDX88059	Canola	cytosol	29.5	31.7
CDY47454	Canola	cytosol	28.71	31.66
CDX83118	Canola	mitochondrion, plastid	27.92	31.4
CDY14026	Canola	cytosol	15.84	31.25
CDY39539	Canola	cytosol, plastid	27.92	31.19
CDY44265	Canola	cytosol	28.91	31.06
CDY12811	Canola	extracellular	28.91	30.87
CDX74510	Canola	cytosol	27.33	30.8
CDY47247	Canola	plasma membrane	22.38	30.62
CDY01691	Canola	plastid	25.94	29.98
CDX68582	Canola	mitochondrion	8.71	29.93
CDY32573	Canola	cytosol	21.78	29.57
CDY01433	Canola	cytosol	25.35	29.29
CDX74540	Canola	cytosol	23.37	29.14
CDX81339	Canola	cytosol	25.94	28.98
CDY18638	Canola	cytosol	25.74	28.76
CDY30596	Canola	extracellular	15.25	28.73
CDY12812	Canola	cytosol	15.84	27.68
CDY66079	Canola	cytosol	6.73	18.68

Protein Annotations

EnsemblPlants:CDY48117	EnsemblPlantsGene:GSBRNA2T00088816001	Gene3D:3.30.559.10	GO:A0A078IDH1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31896
PANTHER:PTHR31896:SF5	PFAM:PF02458	ProteinID:CDY48117	ProteinID:CDY48117.1	SEG:seg	UniParc:UPI0004EDBB48
UniProt:A0A078IDH1	MapMan:35.1	:	:	:	:

Description

BnaC02g03740DBnaC02g03740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDH1]

Coordinates

chrLK032754:+:137497..139293

Molecular Weight (calculated)

55622.1 Da

IEP (calculated)

8.739

GRAVY (calculated)

-0.253

Length

505 amino acids

Sequence
(BLAST)

001: MNPTIAPTRP LYKPPCSHDS SPHQYGNHQS SQINIFFYIF CLFLYKMPSC SVTEISKCIV YPEKRSTVAD LRLSVSDLPM LSCHYIQKGV LLSRPPPSFS
101: LDDLVSSLRR SLSSTLSLFP ALAGRFSTSP SGHIYITCND SGVEFVAASA KHITVSDVLS PGKDVPLLVR EFFVFERLVS YNGHHKPLSA VQVTELDDGV
201: FIGCTVNHSV TDGTSFWHFF NTFADATSGA CKIKHLPDFS RNTVFDSPAV LPVPPGGPRV TFDADQPLRE RVFHFSREAI LKLKQRTNGK ILGKVSNGNG
301: NGKITKKKSY DRTAEISSFQ SLSAQLWRSV TRARNLGPSK TTTFRMAVNC RHRLEPKMDP YYFGNAIQSI PTMASAGDVL AKDLRWSAGQ LHRNVVAHDD
401: ATVRSGIADW ESNPRLFPLG NADGASITMG SSPRFPMYDN DFGWGKPLAV RSGGANKFDG KISAFPGREG NGSVDLEVVL APETMAGIEN DPEFMQYVSE
501: VSYDR

Best Arabidopsis Sequence Match ( AT5G01210.1 )
(BLAST)

001: MPSCSVTEIS KCIVYPEKKS TVSDLRLSVS DLPMLSCHYI QKGVLLTSPP PSFSFDDLVS SLRRSLSSTL SLFPALAGRF STTPAGHISI VCNDAGVDFV
101: AASAKHVKLS DVLLPGEDVP LLFREFFVFE RLVSYNGHHK PLAAVQVTEL HDGVFIGCTV NHSVTDGTSF WHFFNTFADV TSGACKIKHL PDFSRHTVFD
201: SPVVLPVPPG GPRVTFDADQ PLRERIFHFS REAITKLKQR TNNRVNGIET AVNDGRKCNG EINGKITTVL DSFLNNKKSY DRTAEISSFQ SLSAQLWRSV
301: TRARNLDPSK TTTFRMAVNC RHRLEPKMDP YYFGNAIQSI PTLASAGDLL SKDLRWSAEQ LHRNVVAHDD ATVRRGIAAW ESDPRLFPLG NPDGASITMG
401: SSPRFPMYDN DFGWGKPLAV RSGGANKFDG KISAFPGREG NGSVDLEVVL APETMTGIEN DAEFMQYVSE VTYDC

Arabidopsis Description

AT5g01210/F7J8_190 [Source:UniProtKB/TrEMBL;Acc:Q9LFB5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.