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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009632.1-P Field mustard plastid 88.16 97.1
AT5G01210.1 Thale cress cytosol 87.72 84.21
CDY48117 Canola endoplasmic reticulum, nucleus, peroxisome 88.82 80.2
CDY55902 Canola endoplasmic reticulum, nucleus, peroxisome 88.82 79.72
KRH66032 Soybean cytosol 68.86 67.24
KRH75833 Soybean cytosol 68.86 66.24
PGSC0003DMT400052409 Potato cytosol, plastid 64.47 63.91
Solyc09g014280.1.1 Tomato cytosol, plastid 63.82 63.26
VIT_08s0007g01930.t01 Wine grape plastid 68.42 63.16
CDX74815 Canola cytosol, plastid 60.09 63.13
CDY07045 Canola peroxisome 61.18 62.0
CDX93218 Canola peroxisome 60.96 61.64
CDY24938 Canola cytosol, plastid 60.96 60.57
GSMUA_Achr8P19570_001 Banana plastid 49.12 53.08
GSMUA_Achr10P... Banana plastid 48.68 52.98
Zm00001d042826_P001 Maize plastid 54.82 51.65
Os01t0854000-01 Rice plastid 54.61 51.55
GSMUA_AchrUn_... Banana plastid 46.49 51.08
Os05t0449200-01 Rice plastid 53.73 51.04
EES01771 Sorghum plastid 54.39 50.1
Zm00001d010079_P001 Maize plastid 54.61 50.0
TraesCS3B01G399600.1 Wheat plastid 53.95 50.0
TraesCS3A01G367900.1 Wheat plastid 53.95 49.9
TraesCS3D01G360900.1 Wheat plastid 53.95 49.9
EES19625 Sorghum plastid 55.04 48.74
Zm00001d012333_P001 Maize plastid 54.39 48.63
TraesCS1A01G278800.1 Wheat cytosol, plastid 54.17 46.78
TraesCS1B01G287800.1 Wheat cytosol, plastid 53.51 46.3
HORVU3Hr1G085100.2 Barley plastid 54.17 46.25
CDY14025 Canola extracellular 14.91 44.74
HORVU1Hr1G073330.1 Barley cytosol 53.51 43.81
TraesCS1D01G278100.1 Wheat plastid 53.95 43.08
CDX97348 Canola cytosol 21.93 42.02
CDY61372 Canola cytosol 21.27 40.08
CDY17759 Canola cytosol 7.02 40.0
CDX71519 Canola cytosol, nucleus, plastid 38.82 39.42
CDY21238 Canola cytosol 38.38 38.98
CDY02424 Canola cytosol 38.38 38.98
CDY40772 Canola cytosol, nucleus, plastid 34.65 38.26
CDY14027 Canola cytosol, nucleus, plastid 34.43 38.2
CDX81073 Canola cytosol 36.84 36.44
CDX78313 Canola cytosol 36.84 35.67
CDX81074 Canola plastid 35.96 35.65
CDY04024 Canola cytosol 12.06 34.59
CDY40771 Canola cytosol 36.62 34.43
CDY18724 Canola cytosol 31.8 33.96
CDY01434 Canola cytosol 32.46 33.26
CDX83119 Canola cytosol 13.16 33.15
CDX77413 Canola cytosol, plastid 23.25 33.12
CDY07540 Canola cytosol 32.24 32.96
CDY47454 Canola cytosol 32.46 32.31
CDX83118 Canola mitochondrion, plastid 31.8 32.29
CDY40431 Canola cytosol 31.8 32.22
CDY39539 Canola cytosol, plastid 31.36 31.64
CDX74510 Canola cytosol 30.92 31.47
CDX68582 Canola mitochondrion 10.09 31.29
CDY12811 Canola extracellular 32.46 31.29
CDX80398 Canola cytosol 31.8 31.25
CDY47247 Canola plasma membrane 25.22 31.17
CDY01691 Canola plastid 29.61 30.89
CDX88059 Canola cytosol 31.58 30.64
CDY14026 Canola cytosol 17.11 30.47
CDY44265 Canola cytosol 31.36 30.43
CDY32573 Canola cytosol 24.78 30.38
CDX74540 Canola cytosol 26.54 29.88
CDY30596 Canola extracellular 17.32 29.48
CDY01433 Canola cytosol 27.63 28.83
CDX81339 Canola cytosol 27.85 28.1
CDY12812 Canola cytosol 17.54 27.68
CDY18638 Canola cytosol 27.41 27.65
CDY66079 Canola cytosol 7.68 19.23
Protein Annotations
EnsemblPlants:CDY40314EnsemblPlantsGene:GSBRNA2T00069493001Gene3D:3.30.559.10GO:A0A078HSQ1GO:GO:0003674GO:GO:0003824
GO:GO:0016740GO:GO:0016747InterPro:CAT-like_dom_sfInterPro:IPR023213InterPro:Transferasencoils:Coil
PANTHER:PTHR31896PANTHER:PTHR31896:SF5PFAM:PF02458ProteinID:CDY40314ProteinID:CDY40314.1SEG:seg
UniParc:UPI0004EDCC79UniProt:A0A078HSQ1MapMan:35.1:::
Description
BnaA10g27540DBnaA10g27540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSQ1]
Coordinates
chrLK032468:-:72131..73889
Molecular Weight (calculated)
50180.6 Da
IEP (calculated)
7.820
GRAVY (calculated)
-0.252
Length
456 amino acids
Sequence
(BLAST)
001: MPCCSVTREI ISKCIVYPEK KSTVADLRLS VSDLPMLSCH YIQKGVLLAT PPPPSFSFDD LVSSLRRSLS SALSLFPPLA GRFYTSPSGH IYITCNDAGA
101: DFVAASAKHV TVSDVLSPGK DVPLLVREFF VFERLVSYNG HHKPLAAVQV TELEDGVFVG CTVNHCVTDG TSFWHFFNTL ADLTSGKMIK HLPDFSRHTV
201: FDSPQVLPIP PGGPRVTFDA DQPIRERIFH FSREAISKLK QRTNYNKVNG MKSNGNGGGK ITNKNDDPTA EISSFQSLSA QLWRSVTRAR NLDPSKTTTF
301: RMAVNCRHRL EPKMDPYYFG NAIQSIPTMA SAGDLLANDL RWSADQLHRN VVAHDDATVR RGIADWESNP RLFPLGNADG ASITMGSSPR FPMYDNDFGW
401: GKPLAVRSGG ANKFDGKISA FPGREGNGSV DLEVVLAPET MARIENDPDF MQYVSV
Best Arabidopsis Sequence Match ( AT5G01210.1 )
(BLAST)
001: MPSCSVTEIS KCIVYPEKKS TVSDLRLSVS DLPMLSCHYI QKGVLLTSPP PSFSFDDLVS SLRRSLSSTL SLFPALAGRF STTPAGHISI VCNDAGVDFV
101: AASAKHVKLS DVLLPGEDVP LLFREFFVFE RLVSYNGHHK PLAAVQVTEL HDGVFIGCTV NHSVTDGTSF WHFFNTFADV TSGACKIKHL PDFSRHTVFD
201: SPVVLPVPPG GPRVTFDADQ PLRERIFHFS REAITKLKQR TNNRVNGIET AVNDGRKCNG EINGKITTVL DSFLNNKKSY DRTAEISSFQ SLSAQLWRSV
301: TRARNLDPSK TTTFRMAVNC RHRLEPKMDP YYFGNAIQSI PTLASAGDLL SKDLRWSAEQ LHRNVVAHDD ATVRRGIAAW ESDPRLFPLG NPDGASITMG
401: SSPRFPMYDN DFGWGKPLAV RSGGANKFDG KISAFPGREG NGSVDLEVVL APETMTGIEN DAEFMQYVSE VTYDC
Arabidopsis Description
AT5g01210/F7J8_190 [Source:UniProtKB/TrEMBL;Acc:Q9LFB5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.