Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028166.1-P | Field mustard | cytosol | 58.02 | 85.45 |
| CDY01691 | Canola | plastid | 65.93 | 61.1 |
| CDX68582 | Canola | mitochondrion | 21.23 | 58.5 |
| CDX83119 | Canola | cytosol | 25.43 | 56.91 |
| CDY04024 | Canola | cytosol | 21.23 | 54.09 |
| CDX83118 | Canola | mitochondrion, plastid | 58.02 | 52.34 |
| CDX77413 | Canola | cytosol, plastid | 40.49 | 51.25 |
| CDY39539 | Canola | cytosol, plastid | 57.04 | 51.11 |
| CDY01434 | Canola | cytosol | 53.58 | 48.76 |
| CDY17759 | Canola | cytosol | 9.38 | 47.5 |
| CDY32573 | Canola | cytosol | 42.47 | 46.24 |
| CDY07540 | Canola | cytosol | 50.62 | 45.96 |
| CDY12811 | Canola | extracellular | 53.33 | 45.67 |
| CDY12812 | Canola | cytosol | 31.85 | 44.64 |
| CDY18724 | Canola | cytosol | 46.17 | 43.79 |
| CDY30596 | Canola | extracellular | 28.89 | 43.66 |
| CDY01433 | Canola | cytosol | 46.91 | 43.48 |
| CDX74510 | Canola | cytosol | 47.41 | 42.86 |
| CDY18638 | Canola | cytosol | 47.65 | 42.7 |
| CDY47454 | Canola | cytosol | 48.15 | 42.58 |
| CDX81339 | Canola | cytosol | 47.16 | 42.26 |
| CDY40431 | Canola | cytosol | 45.68 | 41.11 |
| CDY47247 | Canola | plasma membrane | 33.09 | 36.31 |
| CDY14026 | Canola | cytosol | 18.02 | 28.52 |
| CDY02424 | Canola | cytosol | 31.6 | 28.51 |
| CDY21238 | Canola | cytosol | 31.6 | 28.51 |
| CDY40772 | Canola | cytosol, nucleus, plastid | 28.15 | 27.6 |
| CDX71519 | Canola | cytosol, nucleus, plastid | 30.37 | 27.39 |
| CDY14027 | Canola | cytosol, nucleus, plastid | 27.65 | 27.25 |
| CDX81073 | Canola | cytosol | 30.86 | 27.11 |
| CDX74815 | Canola | cytosol, plastid | 28.64 | 26.73 |
| CDY40314 | Canola | cytosol | 29.88 | 26.54 |
| CDX81074 | Canola | plastid | 29.88 | 26.3 |
| CDY24938 | Canola | cytosol, plastid | 29.63 | 26.14 |
| CDX78313 | Canola | cytosol | 30.12 | 25.9 |
| CDY07045 | Canola | peroxisome | 28.64 | 25.78 |
| CDX93218 | Canola | peroxisome | 28.15 | 25.28 |
| CDY14025 | Canola | extracellular | 9.38 | 25.0 |
| CDY48117 | Canola | endoplasmic reticulum, nucleus, peroxisome | 29.14 | 23.37 |
| CDY40771 | Canola | cytosol | 27.9 | 23.3 |
| CDX80398 | Canola | cytosol | 26.67 | 23.28 |
| CDY55902 | Canola | endoplasmic reticulum, nucleus, peroxisome | 29.14 | 23.23 |
| CDY44265 | Canola | cytosol | 26.42 | 22.77 |
| CDX88059 | Canola | cytosol | 26.42 | 22.77 |
| CDX97348 | Canola | cytosol | 9.14 | 15.55 |
| CDY61372 | Canola | cytosol | 9.14 | 15.29 |
| CDY66079 | Canola | cytosol | 3.21 | 7.14 |
Protein Annotations
| EnsemblPlants:CDX74540 | EnsemblPlantsGene:GSBRNA2T00114458001 | Gene3D:3.30.559.10 | GO:A0A078CCN6 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0016747 | InterPro:CAT-like_dom_sf | InterPro:IPR023213 | InterPro:Transferase | PANTHER:PTHR31896 |
| PANTHER:PTHR31896:SF12 | PFAM:PF02458 | ProteinID:CDX74540 | ProteinID:CDX74540.1 | UniParc:UPI0004EF136A | MapMan:50.2.3 |
Description
BnaA04g08490D
Coordinates
chrLK031801:-:1240754..1242073
Molecular Weight (calculated)
45327.0 Da
IEP (calculated)
5.927
GRAVY (calculated)
-0.137
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDVILVSSA MVRPENTNQS SRTKIHLTPY DLKLLNFAYP QRGLLFSKPD LETHIIPQLK ASLSTALEIY FPFAGRLIKI DNPEDNTMSY YVDCDGSGAK
101: FIHAKAELVS INDFLQPHDS VPNFTRCFFP ANDFKSSDGI SESLLLLQVT ELIDGVFISF GYNHMVADGS SFWNFIHTWS TICLNGSSSH IHTLVLKDLF
201: LEGIDYPIHI PVPETKIPQK CEIPSEERVF HFTKKNISDL KAKANEDRLN LAADMRRRLN PPLDTACFGN VTHQAMATTR VGEMLDQGLG WAALQINEQV
301: RSLTNENYKT FAETWVRNVR LPQPKISGGP KKADTYLVVT SSPWFEVYDN DFGWGKPIAV RAEPNNGFGV SLVVFRGVEE GSIDVHATIP LSIWSDVLVN
401: LSTAV
101: FIHAKAELVS INDFLQPHDS VPNFTRCFFP ANDFKSSDGI SESLLLLQVT ELIDGVFISF GYNHMVADGS SFWNFIHTWS TICLNGSSSH IHTLVLKDLF
201: LEGIDYPIHI PVPETKIPQK CEIPSEERVF HFTKKNISDL KAKANEDRLN LAADMRRRLN PPLDTACFGN VTHQAMATTR VGEMLDQGLG WAALQINEQV
301: RSLTNENYKT FAETWVRNVR LPQPKISGGP KKADTYLVVT SSPWFEVYDN DFGWGKPIAV RAEPNNGFGV SLVVFRGVEE GSIDVHATIP LSIWSDVLVN
401: LSTAV
001: MPFDLFLSYK VFHLLFYRRK MVEVTVISST MVRPENINQT GRQKIHLTPH DLDLLYLFYP QRGLLFHKPD PENSIIPRLM ASLSTALEIY FPFAGRLVKV
101: NNHEDDTVSF YIDCDGLGAK FVHAKAESIT VNDVLQSHGS VPYFISKFFP ANNVQSRDAL VSEPLLALQV TEMKDGVFIS FGYNHMVADG TCFWKFFHTW
201: SKICLNGSDP SIQSIVLKDW FCDGIDYPVH VPVLEMETLP RWEPSTKERV FHLSKKNILD LKAKANNEID TNDLKISSLQ AVVAYLWLSI IRHSGLNREE
301: ETQCNVAADM RPRLNPLLKK ECFGNVTNLA TATTTVGELL DHGLGWTALQ ISKSVRSETN ESYEVFAKNW VRNVKRPKTS FGSRLANNSL IISSSPRFEV
401: YEHDFGWGKP IAARAGPADG AGGMLVMFRG VEEGSIDVHA TLNSSLWSDV LVNLLTNDMV GQ
101: NNHEDDTVSF YIDCDGLGAK FVHAKAESIT VNDVLQSHGS VPYFISKFFP ANNVQSRDAL VSEPLLALQV TEMKDGVFIS FGYNHMVADG TCFWKFFHTW
201: SKICLNGSDP SIQSIVLKDW FCDGIDYPVH VPVLEMETLP RWEPSTKERV FHLSKKNILD LKAKANNEID TNDLKISSLQ AVVAYLWLSI IRHSGLNREE
301: ETQCNVAADM RPRLNPLLKK ECFGNVTNLA TATTTVGELL DHGLGWTALQ ISKSVRSETN ESYEVFAKNW VRNVKRPKTS FGSRLANNSL IISSSPRFEV
401: YEHDFGWGKP IAARAGPADG AGGMLVMFRG VEEGSIDVHA TLNSSLWSDV LVNLLTNDMV GQ
Arabidopsis Description
At5g38130 [Source:UniProtKB/TrEMBL;Acc:Q6DBD5]
SUBAcon: [plasma membrane,cytosol]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.