Factsheet for PGSC0003DMT400052409

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g014280.1.1	Tomato	cytosol, plastid	95.87	95.87
KRH66032	Soybean	cytosol	66.3	65.31
CDY40314	Canola	cytosol	63.91	64.47
VIT_08s0007g01930.t01	Wine grape	plastid	69.13	64.37
KRH75833	Soybean	cytosol	66.3	64.35
Bra009632.1-P	Field mustard	plastid	57.61	64.01
PGSC0003DMT400069898	Potato	cytosol	63.26	63.68
AT5G01210.1	Thale cress	cytosol	65.43	63.37
Bra028893.1-P	Field mustard	cytosol, plastid	65.0	62.42
PGSC0003DMT400069755	Potato	cytosol, plastid	62.17	61.77
PGSC0003DMT400069897	Potato	plastid	60.43	60.43
CDY48117	Canola	endoplasmic reticulum, nucleus, peroxisome	65.0	59.21
CDY55902	Canola	endoplasmic reticulum, nucleus, peroxisome	64.35	58.27
GSMUA_Achr10P...	Banana	plastid	48.04	52.74
GSMUA_Achr8P19570_001	Banana	plastid	47.17	51.42
GSMUA_AchrUn_...	Banana	plastid	45.22	50.12
Zm00001d042826_P001	Maize	plastid	52.61	50.0
EES01771	Sorghum	plastid	53.26	49.49
Os01t0854000-01	Rice	plastid	51.96	49.48
Os05t0449200-01	Rice	plastid	51.52	49.38
TraesCS3A01G367900.1	Wheat	plastid	52.39	48.88
TraesCS3D01G360900.1	Wheat	plastid	52.17	48.68
TraesCS3B01G399600.1	Wheat	plastid	51.96	48.58
Zm00001d010079_P001	Maize	plastid	51.96	47.99
Zm00001d012333_P001	Maize	plastid	53.04	47.84
EES19625	Sorghum	plastid	52.39	46.8
TraesCS1B01G287800.1	Wheat	cytosol, plastid	51.3	44.78
HORVU3Hr1G085100.2	Barley	plastid	51.96	44.76
TraesCS1A01G278800.1	Wheat	cytosol, plastid	51.3	44.7
HORVU1Hr1G073330.1	Barley	cytosol	51.52	42.55
TraesCS1D01G278100.1	Wheat	plastid	51.3	41.33
PGSC0003DMT400084781	Potato	cytosol	39.78	40.67
PGSC0003DMT400020526	Potato	cytosol	38.48	38.9
PGSC0003DMT400048721	Potato	plasma membrane	30.22	35.46
PGSC0003DMT400010306	Potato	cytosol	34.57	35.26
PGSC0003DMT400026230	Potato	cytosol	28.91	33.0
PGSC0003DMT400066507	Potato	cytosol, nucleus, peroxisome	32.83	32.13
PGSC0003DMT400066504	Potato	cytosol, mitochondrion, peroxisome	31.96	31.48
PGSC0003DMT400066505	Potato	cytosol	32.17	31.42
PGSC0003DMT400040083	Potato	extracellular	18.91	31.18
PGSC0003DMT400075303	Potato	cytosol	19.35	30.17
PGSC0003DMT400093343	Potato	extracellular, plasma membrane	11.96	26.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400052409	EnsemblPlantsGene:PGSC0003DMG400020343	EntrezGene:102605267	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31896
PANTHER:PTHR31896:SF5	PFAM:PF02458	PGSC:PGSC0003DMG400020343	RefSeq:XP_006363050.1	SUPFAM:SSF52777	UniParc:UPI000294FF50
UniProt:M1BTC9	MapMan:35.1	:	:	:	:

Description

AER [Source:PGSC_GENE;Acc:PGSC0003DMG400020343]

Coordinates

chr9:-:350510..352282

Molecular Weight (calculated)

51091.2 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.223

Length

460 amino acids

Sequence
(BLAST)

001: MPTSSLFVVS KCIIYPDHHQ SLNNTLKLSV SDLPMLSCQY IQKGVLLTQS PFESSNSLIS HLKIALSKTL SHFPPLAGRL ITDSDGYVYI ICNDAGVDFV
101: HTKAPHLMIS TLVPQNQSDI PIYFRKFFQF DKTLSYAGHD KPLMAIQVTE LNDGVFIGCT MNHAVVDGTS FWNFFNTFAE FSKGEKKITR QPCFSRKTVF
201: DSPAVLKFPE GGPSATFSGD EPLREKIFHF SREAILKLKL RANKTGVNGK TNGKITPVND ELGLKNGAGV KNSALEISSF QSLSAQLWKS VTRARKLEGN
301: KTTTFRMAVN CRHRLEQRMD PLYFGNGIQS IPTIASVKEL LSNDLYWSAN QLHQNVVAHG DVTVRQGVKD WESNPRLFPL GNFDGAMITM GSSPRFPMYD
401: NDFGWGRPVA VRSGMANKFD GKISAFPGRE GNGTVDLEVV LAPETMAGLE DDMEFMQYVS

Best Arabidopsis Sequence Match ( AT5G01210.1 )
(BLAST)

001: MPSCSVTEIS KCIVYPEKKS TVSDLRLSVS DLPMLSCHYI QKGVLLTSPP PSFSFDDLVS SLRRSLSSTL SLFPALAGRF STTPAGHISI VCNDAGVDFV
101: AASAKHVKLS DVLLPGEDVP LLFREFFVFE RLVSYNGHHK PLAAVQVTEL HDGVFIGCTV NHSVTDGTSF WHFFNTFADV TSGACKIKHL PDFSRHTVFD
201: SPVVLPVPPG GPRVTFDADQ PLRERIFHFS REAITKLKQR TNNRVNGIET AVNDGRKCNG EINGKITTVL DSFLNNKKSY DRTAEISSFQ SLSAQLWRSV
301: TRARNLDPSK TTTFRMAVNC RHRLEPKMDP YYFGNAIQSI PTLASAGDLL SKDLRWSAEQ LHRNVVAHDD ATVRRGIAAW ESDPRLFPLG NPDGASITMG
401: SSPRFPMYDN DFGWGKPLAV RSGGANKFDG KISAFPGREG NGSVDLEVVL APETMTGIEN DAEFMQYVSE VTYDC

Arabidopsis Description

AT5g01210/F7J8_190 [Source:UniProtKB/TrEMBL;Acc:Q9LFB5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.