Factsheet for VIT_13s0019g03430.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069898	Potato	cytosol	70.64	75.27
PGSC0003DMT400069755	Potato	cytosol, plastid	70.43	74.08
Solyc05g052680.1.1	Tomato	cytosol, plastid	68.99	73.52
PGSC0003DMT400069897	Potato	plastid	69.4	73.48
Solyc05g052670.1.1	Tomato	plastid	68.58	72.45
KRH73150	Soybean	cytosol, plastid	69.61	70.92
KRH14988	Soybean	cytosol, plastid	68.38	69.52
CDX74815	Canola	cytosol, plastid	61.4	68.89
AT2G39980.1	Thale cress	cytosol, plastid	66.12	66.81
VIT_08s0007g01930.t01	Wine grape	plastid	67.56	66.6
CDY24938	Canola	cytosol, plastid	62.63	66.45
Bra004996.1-P	Field mustard	cytosol	65.3	66.39
CDY07045	Canola	peroxisome	60.16	65.11
CDX93218	Canola	peroxisome	59.55	64.3
Bra017041.1-P	Field mustard	cytosol	62.01	64.26
GSMUA_Achr10P...	Banana	plastid	46.41	53.94
GSMUA_Achr8P19570_001	Banana	plastid	46.0	53.08
Os01t0854000-01	Rice	plastid	50.72	51.14
Os05t0449200-01	Rice	plastid	50.31	51.04
GSMUA_AchrUn_...	Banana	plastid	43.33	50.84
Zm00001d042826_P001	Maize	plastid	50.51	50.83
EES01771	Sorghum	plastid	51.54	50.71
TraesCS3A01G367900.1	Wheat	plastid	50.51	49.9
TraesCS3D01G360900.1	Wheat	plastid	49.9	49.29
Zm00001d012333_P001	Maize	plastid	51.54	49.22
Zm00001d010079_P001	Maize	plastid	50.31	49.2
TraesCS3B01G399600.1	Wheat	plastid	49.69	49.19
EES19625	Sorghum	plastid	50.92	48.16
HORVU3Hr1G085100.2	Barley	plastid	50.31	45.88
TraesCS1A01G278800.1	Wheat	cytosol, plastid	49.08	45.27
VIT_18s0001g10240.t01	Wine grape	cytosol	12.53	45.19
TraesCS1B01G287800.1	Wheat	cytosol, plastid	48.46	44.78
VIT_02s0109g00390.t01	Wine grape	cytosol	10.68	43.33
VIT_18s0001g10180.t01	Wine grape	cytosol	40.04	42.95
HORVU1Hr1G073330.1	Barley	cytosol	48.87	42.73
VIT_00s0410g00040.t01	Wine grape	cytosol	10.47	42.5
VIT_07s0031g00280.t01	Wine grape	cytosol	10.88	41.73
TraesCS1D01G278100.1	Wheat	plastid	48.87	41.68
VIT_18s0001g10230.t01	Wine grape	cytosol	28.13	41.14
VIT_07s0031g00310.t01	Wine grape	cytosol	10.68	40.94
VIT_18s0001g10200.t01	Wine grape	cytosol	26.28	40.38
VIT_07s0031g00300.t01	Wine grape	plastid	15.61	40.0
VIT_07s0031g00290.t01	Wine grape	cytosol	13.55	38.37
VIT_07s0031g00270.t01	Wine grape	cytosol	33.06	35.94
VIT_16s0050g00830.t01	Wine grape	cytosol	28.95	31.69
VIT_16s0050g00870.t01	Wine grape	cytosol	29.57	24.28

Protein Annotations

EntrezGene:100247932	wikigene:100247932	Gene3D:3.30.559.10	MapMan:35.1	EMBL:AM451599	ProteinID:CAN80937
ProteinID:CAN80937.1	InterPro:CAT-like_dom_sf	ProteinID:CCB56234	ProteinID:CCB56234.1	UniProt:F6HNL5	EMBL:FN595998
GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0016747	InterPro:IPR023213	EntrezGene:LOC100247932
wikigene:LOC100247932	PFAM:PF02458	PANTHER:PTHR31896	PANTHER:PTHR31896:SF11	SUPFAM:SSF52777	InterPro:Transferase
UniParc:UPI000198479D	ArrayExpress:VIT_13s0019g03430	EnsemblPlantsGene:VIT_13s0019g03430	EnsemblPlants:VIT_13s0019g03430.t01	RefSeq:XP_002276050	RefSeq:XP_002276050.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:4509782..4511249

Molecular Weight (calculated)

53584.2 Da

IEP (calculated)

8.267

GRAVY (calculated)

-0.126

Length

487 amino acids

Sequence
(BLAST)

001: MRPDSVTIVS NCTVIPEKKS SLGDLKLSAS DLPMLSCHYI QKGGLFTRPP FPIDALLALL KRALSSTLVH FPPLAGRLIT DAHGYVYITC NDAGVDFIHA
101: NAGHIFIRDL LSPIHVPDSF KEFFAFDRTV SYDGHFKPIM AVQVTELADG VFIGCAVNHA VTDGTSFWNF FNTFADLSRG LKRISRAPCF ERKSVLISQA
201: VLMVPQGGPK VTFSGDAPLA ERIFSFSREA ILKLKSKVNN HQSSCIGEID AIEILGKQSN DPWKPDQKAS GKVTSVLENW LKNAVAVSKP QTDCPNQTVE
301: ISSFQSLSAL LWRAVTRARK FHPSKTTTFR MAVNVRHRLE PKLDPLYFGN AIQSIPTYAS AGDVLSRDLR WCAEQLNSNV KAHNDDMVRK FIGDWESSPK
401: CFPLGNFDGA MITMGSSPRF PMYDNDFGWG RPMAIRGGRA NKFDGKISAF PGREGGGSVD LEVVLSPETM AGLESDSEFM QYVTGCA

Best Arabidopsis Sequence Match ( AT2G39980.1 )
(BLAST)

001: MPSLEKSVTI ISRNRVFPDQ KSTLVDLKLS VSDLPMLSCH YIQKGCLFTC PNLPLPALIS HLKHSLSITL THFPPLAGRL STSSSGHVFL TCNDAGADFV
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK

Arabidopsis Description

At2g39980/T28M21.14 [Source:UniProtKB/TrEMBL;Acc:O04201]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.