Factsheet for VIT_16s0050g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g01180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23940.1	VIT_05s0020g01180.t01	AT1G09100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g00830.t01	Wine grape	cytosol	68.13	90.79
KRH08886	Soybean	cytosol, nucleus	51.6	68.15
PGSC0003DMT400026230	Potato	cytosol	46.21	67.99
KRH38407	Soybean	cytosol	50.76	67.19
Solyc03g025320.2.1	Tomato	cytosol, nucleus	50.25	65.93
CDY44265	Canola	cytosol	47.55	60.0
Bra009716.1-P	Field mustard	cytosol	46.71	59.96
CDX80398	Canola	cytosol	46.88	59.91
CDX88059	Canola	cytosol	46.88	59.15
Bra029388.1-P	Field mustard	cytosol	47.22	58.82
AT5G23940.1	Thale cress	mitochondrion	47.22	57.85
GSMUA_AchrUn_...	Banana	cytosol	41.48	55.16
TraesCS1A01G341300.1	Wheat	golgi, unclear	39.63	52.57
HORVU1Hr1G075900.1	Barley	cytosol	39.46	52.12
TraesCS1B01G354000.1	Wheat	cytosol	39.12	52.02
TraesCS1D01G343400.1	Wheat	golgi	39.12	51.9
Os08t0562500-01	Rice	plastid	38.45	51.24
Zm00001d031893_P001	Maize	mitochondrion	38.11	50.9
EES14067	Sorghum	cytosol, peroxisome, plastid	38.45	48.82
VIT_18s0001g10240.t01	Wine grape	cytosol	8.77	38.52
VIT_07s0031g00300.t01	Wine grape	plastid	11.13	34.74
VIT_07s0031g00310.t01	Wine grape	cytosol	7.25	33.86
VIT_18s0001g10180.t01	Wine grape	cytosol	25.8	33.7
VIT_18s0001g10200.t01	Wine grape	cytosol	17.37	32.49
VIT_18s0001g10230.t01	Wine grape	cytosol	18.04	32.13
VIT_07s0031g00280.t01	Wine grape	cytosol	6.75	31.5
VIT_08s0007g01930.t01	Wine grape	plastid	25.97	31.17
VIT_13s0019g03430.t01	Wine grape	cytosol, peroxisome, plastid	24.28	29.57
VIT_00s0410g00040.t01	Wine grape	cytosol	5.9	29.17
VIT_02s0109g00390.t01	Wine grape	cytosol	5.9	29.17
VIT_07s0031g00290.t01	Wine grape	cytosol	8.43	29.07
VIT_07s0031g00270.t01	Wine grape	cytosol	21.75	28.79

Protein Annotations

EntrezGene:100243942	wikigene:100243942	Gene3D:2.60.40.150	MapMan:21.9.5.3	Gene3D:3.30.559.10	EMBL:AM436404
InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAN78339	ProteinID:CAN78339.1	InterPro:CAT-like_dom_sf	ProteinID:CCB47852
ProteinID:CCB47852.1	UniProt:F6H6F0	EMBL:FN595243	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016747	InterPro:IPR000008	InterPro:IPR023213	InterPro:IPR035892	EntrezGene:LOC100243942	wikigene:LOC100243942
PFAM:PF00168	PFAM:PF02458	PFscan:PS50004	PANTHER:PTHR31896	PANTHER:PTHR31896:SF4	SMART:SM00239
SUPFAM:SSF49562	InterPro:Transferase	UniParc:UPI00015CBD04	ArrayExpress:VIT_16s0050g00870	EnsemblPlantsGene:VIT_16s0050g00870	EnsemblPlants:VIT_16s0050g00870.t01
RefSeq:XP_002271409	RefSeq:XP_002271409.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:17806343..17808327

Molecular Weight (calculated)

66215.1 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.293

Length

593 amino acids

Sequence
(BLAST)

001: MASRYELELI ISSAKDLKNV NRRHGSLKPY VVVWVDPAAK LSTKVDNEGD TSPGWNETLL IPVPSRIEDS TLYLDVVHFK ADDEDDTKPV VGSARLFLPH
101: VVDEVGFGAQ AIRTLELHRP SGHPQGKVEV KVSVRDPRYR APESAYATPC VDQVVKKEEA EVVKVAVHGK SHIMPTKKLG RRECQLVTFD LPYLAFYYNQ
201: KLLFYKGCDF EDMVGKLKDG LGVVLEEFYQ LAGKLEKDED GVFKVVYDDE MEGVEVLEAS ADHVSVSDLM DVESTSMMKD MLPHTQVLNF EGLHKPLLVL
301: QFTKLRDGLA MGCAFNHAVL DGTSTWHFMS SWAEICSGAD SISVPPFLDR TKARKTRVKF DLPLDPTAAN PSGTSEPPPL LRERIFRFSE SQINRVKSTL
401: NKTPSDGSRP FSSFQSLSTH VWLAVTRARQ LKPEDVTVYT VFANCRKRVD PPMPESYFGN LIQAIFTVTA AGLLYANPPE FAAAMIQKAI VTNDAKAINE
501: RNDKWESNPI IFQFKDAGVN CVTVGSSPRF KVYDVDFGFG KPERVRSGSN NKFDGMVYLY QGKTGGGSID VEITLEAGTM ERLEKDKEFL MEV

Best Arabidopsis Sequence Match ( AT5G23940.1 )
(BLAST)

001: MKIKIMSKTH VKPTKPVLGK KQFHLTTFDL PYLAFYYNQK FLLYKFQNLL DLEEPTFQNE VVENLKDGLG LVLEDFYQLA GKLAKDDEGV FRVEYDAEDS
101: EINGVEFSVA HAADVTVDDL TAEDGTAKFK ELVPYNGILN LEGLSRPLLA VQVTKLKDGL AMGLAFNHAV LDGTSTWHFM SSWAEICRGA QSISTQPFLD
201: RSKARDTRVK LDLTAPKDPN ETSNGEDAAN PTVEPPQLVE KIFRFSDFAV HTIKSRANSV IPSDSSKPFS TFQSLTSHIW RHVTLARGLK PEDITIFTVF
301: ADCRRRVDPP MPEEYFGNLI QAIFTGTAAG LLAAHGPEFG ASVIQKAIAA HDASVIDARN DEWEKSPKIF QFKDAGVNCV AVGSSPRFRV YEVDFGFGKP
401: ETVRSGSNNR FNGMMYLYQG KAGGISIDVE ITLEASVMEK LVKSKEFLLS EEEEEDDGKK LTNGNGHVNG NGNGYVNGNG NGFV

Arabidopsis Description

DCRBAHD acyltransferase DCR [Source:UniProtKB/Swiss-Prot;Acc:Q9FF86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.